7TSU

Room temperature rsEospa Cis-state structure at pH 5.5


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE5.52930.2 M LITHIUM SULFATE 0.1 M TRIS-Cl pH 5.5, 25% PEG 3350, 15 mg/ml PROTEIN CONCENTRATION
Crystal Properties
Matthews coefficientSolvent content
2.2545.36

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.6α = 90
b = 74.43β = 90
c = 78.32γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298PIXELDECTRIS PILATUS3 6M2020-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.9801DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7578.911000.913.772332.58063563
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8131000.411.02

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5OQ9, 5OQA1.7554.01124056115999.9670.2060.20440.239921.69
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.549-0.116-0.432
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.341
r_dihedral_angle_4_deg17.389
r_dihedral_angle_3_deg13.433
r_dihedral_angle_1_deg7.426
r_lrange_it5.537
r_lrange_other5.489
r_scangle_it3.873
r_scangle_other3.872
r_mcangle_other2.972
r_mcangle_it2.971
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.341
r_dihedral_angle_4_deg17.389
r_dihedral_angle_3_deg13.433
r_dihedral_angle_1_deg7.426
r_lrange_it5.537
r_lrange_other5.489
r_scangle_it3.873
r_scangle_other3.872
r_mcangle_other2.972
r_mcangle_it2.971
r_scbond_it2.407
r_scbond_other2.406
r_mcbond_it1.82
r_mcbond_other1.765
r_angle_refined_deg1.602
r_angle_other_deg1.306
r_nbd_refined0.195
r_symmetry_xyhbond_nbd_other0.185
r_symmetry_nbd_other0.181
r_symmetry_nbd_refined0.173
r_nbtor_refined0.168
r_xyhbond_nbd_refined0.152
r_symmetry_nbtor_other0.142
r_nbd_other0.14
r_symmetry_xyhbond_nbd_refined0.112
r_chiral_restr0.07
r_bond_refined_d0.009
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1748
Nucleic Acid Atoms
Solvent Atoms107
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
CrystFELdata reduction
CrystFELdata scaling
REFMACphasing