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Room temperature rsEospa Cis-state structure at pH 5.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OQ9 5OQ9, 5OQA experimental model PDB 5OQA 5OQ9, 5OQA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 5.5 293 0.2 M LITHIUM SULFATE 0.1 M TRIS-Cl pH 5.5, 25% PEG 3350, 15 mg/ml PROTEIN CONCENTRATION
Crystal Properties Matthews coefficient Solvent content 2.25 45.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.6 α = 90 b = 74.43 β = 90 c = 78.32 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS3 6M 2020-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9801 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 78.91 100 0.91 3.772 332.5 8063563
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.813 100 0.41 1.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5OQ9, 5OQA 1.75 54.011 24056 1159 99.967 0.206 0.2044 0.2045 0.2399 0.2399 21.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.549 -0.116 -0.432
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.341 r_dihedral_angle_4_deg 17.389 r_dihedral_angle_3_deg 13.433 r_dihedral_angle_1_deg 7.426 r_lrange_it 5.537 r_lrange_other 5.489 r_scangle_it 3.873 r_scangle_other 3.872 r_mcangle_other 2.972 r_mcangle_it 2.971
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.341 r_dihedral_angle_4_deg 17.389 r_dihedral_angle_3_deg 13.433 r_dihedral_angle_1_deg 7.426 r_lrange_it 5.537 r_lrange_other 5.489 r_scangle_it 3.873 r_scangle_other 3.872 r_mcangle_other 2.972 r_mcangle_it 2.971 r_scbond_it 2.407 r_scbond_other 2.406 r_mcbond_it 1.82 r_mcbond_other 1.765 r_angle_refined_deg 1.602 r_angle_other_deg 1.306 r_nbd_refined 0.195 r_symmetry_xyhbond_nbd_other 0.185 r_symmetry_nbd_other 0.181 r_symmetry_nbd_refined 0.173 r_nbtor_refined 0.168 r_xyhbond_nbd_refined 0.152 r_symmetry_nbtor_other 0.142 r_nbd_other 0.14 r_symmetry_xyhbond_nbd_refined 0.112 r_chiral_restr 0.07 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1748 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling REFMAC phasing