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Room temperature rsEospa Trans-state structure at pH 8.4
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OQ9 5OQ9, 5OQA experimental model PDB 5OQA 5OQ9, 5OQA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 8.4 293 0.2 M LITHIUM SULFATE 0.1 M TRIS-Cl PH 8.5, 25% PEG 3350, 15 mg/ml PROTEIN CONCENTRATION
Crystal Properties Matthews coefficient Solvent content 2.26 45.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.6 α = 90 b = 74.5 β = 90 c = 78.98 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS3 6M 2020-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9801 Diamond I24
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 fixed target
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 78.91 100 0.91 4.035 541.8 13139114
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.813 100 0.52 1.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5OQ9, 5OQA 1.75 39.521 24263 1161 99.955 0.194 0.1919 0.1917 0.2326 0.2325 21.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.348 0.034 -0.382
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.625 r_dihedral_angle_4_deg 18.228 r_dihedral_angle_3_deg 12.916 r_dihedral_angle_1_deg 7.322 r_lrange_it 6.171 r_lrange_other 6.16 r_scangle_it 4.338 r_scangle_other 4.336 r_scbond_it 2.732 r_scbond_other 2.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.625 r_dihedral_angle_4_deg 18.228 r_dihedral_angle_3_deg 12.916 r_dihedral_angle_1_deg 7.322 r_lrange_it 6.171 r_lrange_other 6.16 r_scangle_it 4.338 r_scangle_other 4.336 r_scbond_it 2.732 r_scbond_other 2.73 r_mcangle_it 2.697 r_mcangle_other 2.696 r_mcbond_it 1.669 r_mcbond_other 1.667 r_angle_refined_deg 1.549 r_angle_other_deg 1.324 r_symmetry_xyhbond_nbd_refined 0.208 r_nbd_refined 0.187 r_symmetry_nbd_other 0.175 r_symmetry_nbd_refined 0.171 r_nbtor_refined 0.168 r_nbd_other 0.157 r_xyhbond_nbd_refined 0.155 r_symmetry_nbtor_other 0.145 r_chiral_restr 0.067 r_xyhbond_nbd_other 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1748 Nucleic Acid Atoms Solvent Atoms 104 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling REFMAC phasing