7TSS

Room temperature rsEospa Trans-state structure at pH 8.4


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1BATCH MODE8.42930.2 M LITHIUM SULFATE 0.1 M TRIS-Cl PH 8.5, 25% PEG 3350, 15 mg/ml PROTEIN CONCENTRATION
Crystal Properties
Matthews coefficientSolvent content
2.2645.57

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.6α = 90
b = 74.5β = 90
c = 78.98γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray298PIXELDECTRIS PILATUS3 6M2020-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.9801DiamondI24

Serial Crystallography

Sample delivery method
Diffraction IDDescriptionSample Delivery Method
1fixed target

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7578.911000.914.035541.813139114
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8131000.521.31

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE5OQ9, 5OQA1.7539.52124263116199.9550.1940.19190.232621.68
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.3480.034-0.382
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.625
r_dihedral_angle_4_deg18.228
r_dihedral_angle_3_deg12.916
r_dihedral_angle_1_deg7.322
r_lrange_it6.171
r_lrange_other6.16
r_scangle_it4.338
r_scangle_other4.336
r_scbond_it2.732
r_scbond_other2.73
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.625
r_dihedral_angle_4_deg18.228
r_dihedral_angle_3_deg12.916
r_dihedral_angle_1_deg7.322
r_lrange_it6.171
r_lrange_other6.16
r_scangle_it4.338
r_scangle_other4.336
r_scbond_it2.732
r_scbond_other2.73
r_mcangle_it2.697
r_mcangle_other2.696
r_mcbond_it1.669
r_mcbond_other1.667
r_angle_refined_deg1.549
r_angle_other_deg1.324
r_symmetry_xyhbond_nbd_refined0.208
r_nbd_refined0.187
r_symmetry_nbd_other0.175
r_symmetry_nbd_refined0.171
r_nbtor_refined0.168
r_nbd_other0.157
r_xyhbond_nbd_refined0.155
r_symmetry_nbtor_other0.145
r_chiral_restr0.067
r_xyhbond_nbd_other0.066
r_bond_refined_d0.009
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1748
Nucleic Acid Atoms
Solvent Atoms104
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
CrystFELdata reduction
CrystFELdata scaling
REFMACphasing