☰ Navigation Tabs
Room temperature rsEospa Cis-state structure at pH 8.4
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OQ9 5OQ9,5OQA experimental model PDB 5OQA 5OQ9,5OQA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 8.4 293 0.2 M LITHIUM SULFATE 0.1 M TRIS-Cl pH 8.4 25% PEG 3350, 15 mg/ml PROTEIN CONCENTRATION
Crystal Properties Matthews coefficient Solvent content 2.27 45.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.6 α = 90 b = 74.5 β = 90 c = 78.98 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS3 6M 2020-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9801 Diamond I24
Serial Crystallography Sample delivery method Diffraction ID Description Sample Delivery Method 1 fixed target
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 78.91 100 0.9 3.566 439.66 10662201
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.813 0.29 0.79
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5OQ9,5OQA 1.75 39.521 24265 1195 99.963 0.216 0.2139 0.2138 0.2472 0.2469 22.287
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.278 0.03 -0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.509 r_dihedral_angle_4_deg 18.22 r_dihedral_angle_3_deg 14.154 r_dihedral_angle_1_deg 7.119 r_lrange_it 5.753 r_scangle_it 4.121 r_scbond_it 2.674 r_mcangle_it 2.672 r_mcbond_it 1.69 r_angle_refined_deg 1.532
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.509 r_dihedral_angle_4_deg 18.22 r_dihedral_angle_3_deg 14.154 r_dihedral_angle_1_deg 7.119 r_lrange_it 5.753 r_scangle_it 4.121 r_scbond_it 2.674 r_mcangle_it 2.672 r_mcbond_it 1.69 r_angle_refined_deg 1.532 r_nbtor_refined 0.307 r_symmetry_xyhbond_nbd_refined 0.279 r_nbd_refined 0.198 r_xyhbond_nbd_refined 0.143 r_symmetry_nbd_refined 0.126 r_chiral_restr 0.106 r_gen_planes_refined 0.008 r_bond_refined_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1748 Nucleic Acid Atoms Solvent Atoms 96 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement CrystFEL data reduction CrystFEL data scaling REFMAC phasing