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Yeast ATP synthase State 1catalytic(e) with 10 mM ATP backbone model
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2HLD
Sample Yeast ATP synthase State 1catalytic(e) with 10 mM ATP backbone model
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument LEICA EM GP Cryogen Name ETHANE-PROPANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 9849 Reported Resolution (Å) 7.1 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (2HLD) Refinement Space RECIPROCAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 40
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1100 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 59000 Calibrated Magnification 103896 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC 3.1.0 MODEL FITTING UCSF Chimera 1.2 MODEL REFINEMENT Coot 0.9.2 MODEL REFINEMENT ISOLDE 1.2.0 MODEL REFINEMENT PHENIX 1.19.2 INITIAL EULER ASSIGNMENT cryoSPARC 3.1.0 FINAL EULER ASSIGNMENT cryoSPARC 3.1.0 CLASSIFICATION cryoSPARC 3.1.0 RECONSTRUCTION cryoSPARC 3.1.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2534488