X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2V0W 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2931 M lithium sulphate, 2% PEG8000, pH undefined
Crystal Properties
Matthews coefficientSolvent content
1.9837.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 40.142α = 90
b = 50.768β = 90
c = 87.263γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2013-12-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06DA1.0SLSX06DA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.143.8883.50.0440.0130.99920.912.446107
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.11.1974.80.7021.99.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2V0W1.143.8843785232263.440.15430.15170.2033RANDOM18.628
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.11-0.05-0.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.898
r_dihedral_angle_4_deg21.602
r_dihedral_angle_3_deg14.187
r_dihedral_angle_1_deg6.602
r_rigid_bond_restr3.514
r_angle_refined_deg2.067
r_angle_other_deg1.557
r_chiral_restr0.109
r_bond_refined_d0.016
r_gen_planes_refined0.012
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.898
r_dihedral_angle_4_deg21.602
r_dihedral_angle_3_deg14.187
r_dihedral_angle_1_deg6.602
r_rigid_bond_restr3.514
r_angle_refined_deg2.067
r_angle_other_deg1.557
r_chiral_restr0.109
r_bond_refined_d0.016
r_gen_planes_refined0.012
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1577
Nucleic Acid Atoms
Solvent Atoms242
Heterogen Atoms32

Software

Software
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
autoPROCdata reduction
STARANISOdata scaling
MOLREPphasing