7T8H

G93A mutant of human SOD1 bound with MR6-26-2 in P21 space group


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.7292100mM NaOAc pH 4.7, 150mM NaCl, 2.7M ammonium sulphate
Crystal Properties
Matthews coefficientSolvent content
2.0138.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.54α = 90
b = 68.478β = 105.024
c = 49.965γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 9M2021-01-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.9800DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.548.30399.10.0520.0720.0490.9949.42.940225
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5388.60.3010.4150.2840.8482.12.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2WKO1.548.30339919198199.2960.1880.18620.223617.367
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.138-0.504-0.3130.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.778
r_dihedral_angle_other_3_deg24.553
r_dihedral_angle_3_deg12.528
r_dihedral_angle_4_deg11.054
r_dihedral_angle_1_deg7.276
r_lrange_it5.298
r_lrange_other5.214
r_scangle_other3.482
r_scangle_it3.48
r_mcangle_it2.41
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.778
r_dihedral_angle_other_3_deg24.553
r_dihedral_angle_3_deg12.528
r_dihedral_angle_4_deg11.054
r_dihedral_angle_1_deg7.276
r_lrange_it5.298
r_lrange_other5.214
r_scangle_other3.482
r_scangle_it3.48
r_mcangle_it2.41
r_mcangle_other2.41
r_scbond_it2.265
r_scbond_other2.264
r_angle_refined_deg1.55
r_mcbond_it1.464
r_mcbond_other1.463
r_angle_other_deg1.459
r_metal_ion_refined0.386
r_symmetry_nbd_refined0.267
r_symmetry_xyhbond_nbd_refined0.228
r_nbd_other0.226
r_nbd_refined0.211
r_symmetry_nbd_other0.179
r_nbtor_refined0.155
r_xyhbond_nbd_refined0.152
r_symmetry_nbtor_other0.078
r_ncsr_local_group_10.074
r_chiral_restr0.069
r_bond_refined_d0.014
r_symmetry_xyhbond_nbd_other0.011
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2195
Nucleic Acid Atoms
Solvent Atoms223
Heterogen Atoms56

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing