7T8E

G93A mutant of human SOD1 in P21 space group


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.7292100mM NaOAc pH 4.7, 150mM NaCl, 2.7M ammonium sulphate
Crystal Properties
Matthews coefficientSolvent content
2.0540.04

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 38.74α = 90
b = 68.21β = 105.63
c = 51.08γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 9M2021-01-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I240.980000DiamondI24

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.449.2499.60.0650.9948.73.250157
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.41.4299.20.5420.5631.82.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2WKO1.449.2450157259899.5490.20.19870.22918.607
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.0310.07-0.850.674
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.396
r_dihedral_angle_3_deg12.835
r_dihedral_angle_4_deg8.369
r_dihedral_angle_1_deg7.288
r_lrange_it4.645
r_lrange_other4.508
r_scangle_other3.239
r_scangle_it3.236
r_scbond_it2.11
r_scbond_other2.096
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.396
r_dihedral_angle_3_deg12.835
r_dihedral_angle_4_deg8.369
r_dihedral_angle_1_deg7.288
r_lrange_it4.645
r_lrange_other4.508
r_scangle_other3.239
r_scangle_it3.236
r_scbond_it2.11
r_scbond_other2.096
r_mcangle_it2.019
r_mcangle_other2.019
r_angle_refined_deg1.713
r_angle_other_deg1.436
r_mcbond_it1.301
r_mcbond_other1.29
r_symmetry_nbd_refined0.231
r_nbd_other0.212
r_nbd_refined0.184
r_symmetry_xyhbond_nbd_refined0.179
r_symmetry_nbd_other0.176
r_xyhbond_nbd_refined0.174
r_nbtor_refined0.149
r_ncsr_local_group_10.096
r_symmetry_nbtor_other0.078
r_chiral_restr0.067
r_bond_refined_d0.018
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2198
Nucleic Acid Atoms
Solvent Atoms240
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
Aimlessdata scaling
MOLREPphasing