☰ Navigation Tabs
P. aeruginosa LpxA in complex with ligand H16
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6UEG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 12% PEG 1,000, 0.2 M CaOAc, 0.1 M imidazole pH7
Crystal Properties Matthews coefficient Solvent content 2.18 43.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.23 α = 90 b = 82.69 β = 90 c = 221.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.688800 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 45.46 86.7 0.141 0.159 0.07 0.988 5.8 4.1 25934
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.18 87.2 0.502 0.597 0.314 0.721 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6ueg 3 45.46 24677 1221 85.31 0.2065 0.2041 0.2093 0.2588 0.2597 RANDOM 52.365
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.36 -0.07 2.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.93 r_dihedral_angle_4_deg 17.835 r_dihedral_angle_3_deg 16.029 r_dihedral_angle_1_deg 7.077 r_angle_refined_deg 1.262 r_angle_other_deg 1.049 r_chiral_restr 0.035 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.93 r_dihedral_angle_4_deg 17.835 r_dihedral_angle_3_deg 16.029 r_dihedral_angle_1_deg 7.077 r_angle_refined_deg 1.262 r_angle_other_deg 1.049 r_chiral_restr 0.035 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11790 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 120
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing