7SXB | pdb_00007sxb

NMR Solution Structure for Domain 3 of Heligmosomoides polygyrus protein Transforming Growth Factor Beta Mimic 1 (TGM-1 D3)

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-15N HSQC	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
2	3D HNHB	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 700
3	3D HCCH-TOCSY	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 700
4	2D 1H-13C HSQC	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 700
12	3D HN(CO)CA	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 900
5	3D HN(CO)CA	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	10mg/mL pf1 phage, 95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 900
6	3D HBHA(CO)NH	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 700
7	3D HNCO	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
26	3D HNCO	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	10mg/mL pf1 phage, 95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
8	3D HN(CA)CO	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
9	2D CB(CGCDCD)HD	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
10	1H 13C HSQC-TOCSY	250 uM [U-100% 13C; U-100% 15N; U-80% 2H] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
11	3D 1H-13C NOESY aliphatic	250 uM [U-100% 13C; U-100% 15N; U-80% 2H] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 800
13	3D 1H-15N NOESY	250 uM [U-100% 13C; U-100% 15N; U-80% 2H] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 800
14	2D CB(CGCDCD)HE	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
15	3D HNCACB	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
16	3D H(CCO)NH	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 700
17	3D 1H-13C NOESY aromatic	250 uM [U-100% 13C; U-100% 15N; U-80% 2H] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE 800
18	3D C(CO)NH	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
19	3D 1H-15N NOESY	250 uM [U-100% 15N; U-80% 2H] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
20	3D HCA(CO)N	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
21	2D 1H-13C HSQC	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
22	3D CBCA(CO)NH	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
23	2D 1H-15N HSQC IPAP	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600
24	2D 1H-15N HSQC IPAP	250 uM [U-100% 13C; U-100% 15N] TGM-1 D3	10mg/mL pf1 phage, 95% H2O/5% D2O	25mM Na2HPO4, 50mM NaCl M	6.0	ambient	310	Bruker AVANCE III 600

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	600
2	Bruker	AVANCE	700
3	Bruker	AVANCE	800
4	Bruker	AVANCE	900

NMR Refinement
Method	Details	Software
simulated annealing		X-PLOR NIH

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	500
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	refinement	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
2	structure calculation	X-PLOR NIH		Schwieters, Kuszewski, Tjandra and Clore
3	chemical shift assignment	CcpNmr Analysis		CCPN
4	chemical shift assignment	NMRFAM-SPARKY		Lee W, Tonelli M, Markley JL
5	chemical shift assignment	I-PINE		Lee, Bahrami, Dashti, Eghbalnia, Tonelli, Westler and Markley
6	peak picking	CcpNmr Analysis		CCPN
7	peak picking	NMRFAM-SPARKY		Lee W, Tonelli M, Markley JL
8	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
9	collection	TopSpin		Bruker Biospin

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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NMR Solution Structure for Domain 3 of Heligmosomoides polygyrus protein Transforming Growth Factor Beta Mimic 1 (TGM-1 D3)

7SXB | pdb_00007sxb