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Crystal Structure of the Hypothetical Protein (ACX60_00475) from Acinetobacter baumannii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 292 Protein: 8.8 mg/ml, 0.01M Tris HCl (pH 8.3);
Screen: Classics II (D10), 0.1M Bis-Tris (pH 6.5), 20% (w/v) PEG5000 MME
Crystal Properties Matthews coefficient Solvent content 1.8 31.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.755 α = 90 b = 59.784 β = 90 c = 75.625 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Be 2019-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-E 0.97872 APS 21-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 30 99.5 0.069 0.069 0.079 0.037 24.3 4.3 27958 -3 22.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 99 0.687 0.687 0.787 0.379 0.71 2.4 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 27.06 26532 1376 99.19 0.1775 0.1759 0.1756 0.2079 0.2062 RANDOM 25.796
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 -0.39 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.814 r_dihedral_angle_4_deg 14.337 r_dihedral_angle_3_deg 8.965 r_dihedral_angle_1_deg 3.065 r_angle_refined_deg 1.365 r_angle_other_deg 0.342 r_chiral_restr 0.063 r_gen_planes_refined 0.054 r_gen_planes_other 0.049 r_bond_refined_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.814 r_dihedral_angle_4_deg 14.337 r_dihedral_angle_3_deg 8.965 r_dihedral_angle_1_deg 3.065 r_angle_refined_deg 1.365 r_angle_other_deg 0.342 r_chiral_restr 0.063 r_gen_planes_refined 0.054 r_gen_planes_other 0.049 r_bond_refined_d 0.006 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1539 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms 11
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing