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Structure of Fab CC-95251 in complex with SIRP-alpha
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JJS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1M MES pH 6.5, 25 %w/v PEG MME 550, 0.01 M Zinc sulfate
Crystal Properties Matthews coefficient Solvent content 3.46 64.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.957 α = 77.18 b = 97.704 β = 85.92 c = 103.385 γ = 85.74
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 92 MICROMAX CONFOCAL 2016-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.0782
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 95 88.6 0.996 6.3 2.2 83446
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.22 0.804 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2JJS 2.2 50.01 69503 3601 88.17 0.2463 0.2446 0.2487 0.2797 0.2808 RANDOM 41.674
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.55 1.33 0.52 0.15 -0.48 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.496 r_dihedral_angle_4_deg 18.746 r_dihedral_angle_3_deg 15.508 r_dihedral_angle_1_deg 7.215 r_angle_refined_deg 1.764 r_angle_other_deg 1.106 r_chiral_restr 0.102 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.496 r_dihedral_angle_4_deg 18.746 r_dihedral_angle_3_deg 15.508 r_dihedral_angle_1_deg 7.215 r_angle_refined_deg 1.764 r_angle_other_deg 1.106 r_chiral_restr 0.102 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7446 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 30
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing