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Crystal Structure of Consomatin-Ro1 <structure_details=Consomatin-Ro1, a cone snail venom SSTL mimetic
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 286 1 micro-liter protein in 100 mM NaCl, 25 mM Tris-Cl pH 7.9, 10% glycerol, 1 mM EDTA, 1 mM TCEP mixed with 1 micro-liter 25% PEG 3350, 100 mM Tris-bis pH 5.5, 100 mM MgCl2 at 13C (286 K)
Crystal Properties Matthews coefficient Solvent content 2.6 52.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.282 α = 90 b = 50.282 β = 90 c = 135.005 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2018-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.77114 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 36.619 99.9 0.227 0.228 0.019 1 24.3 140.4 8016
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 98.2 7.639 7.676 0.744 0.7 102.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.95 36.619 7963 1167 99.962 0.243 0.2362 0.2368 0.2816 0.2828 49.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.153 -0.076 -0.153 0.496
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.286 r_dihedral_angle_1_deg 10.286 r_dihedral_angle_2_deg 9.645 r_lrange_it 9.207 r_lrange_other 9.201 r_scangle_it 5.772 r_scangle_other 5.768 r_mcangle_it 5.673 r_mcangle_other 5.672 r_scbond_it 3.868
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.286 r_dihedral_angle_1_deg 10.286 r_dihedral_angle_2_deg 9.645 r_lrange_it 9.207 r_lrange_other 9.201 r_scangle_it 5.772 r_scangle_other 5.768 r_mcangle_it 5.673 r_mcangle_other 5.672 r_scbond_it 3.868 r_scbond_other 3.864 r_mcbond_it 3.43 r_mcbond_other 3.423 r_angle_refined_deg 2.245 r_angle_other_deg 0.764 r_xyhbond_nbd_refined 0.23 r_symmetry_nbd_other 0.214 r_symmetry_xyhbond_nbd_refined 0.201 r_nbd_refined 0.197 r_nbtor_refined 0.19 r_nbd_other 0.179 r_symmetry_nbd_refined 0.128 r_symmetry_nbtor_other 0.091 r_chiral_restr 0.075 r_bond_refined_d 0.012 r_gen_planes_refined 0.012 r_symmetry_xyhbond_nbd_other 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 648 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 50
Software Software Software Name Purpose XDS data reduction Aimless data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction