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Structure of ATP7B in state 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RFU
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 3.435 f_angle_d 0.436 f_chiral_restr 0.041 f_plane_restr 0.003 f_bond_d 0.002
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 118418 Reported Resolution (Å) 3.49 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (3RFU) Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 QUANTUM (4k x 4k) Electron Dose (electrons/Å**2) 61
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION CTFFIND 1.14 CTF CORRECTION cryoSPARC 3.2 MODEL FITTING PHENIX MODEL REFINEMENT PHENIX FINAL EULER ASSIGNMENT cryoSPARC RECONSTRUCTION cryoSPARC 3.2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1889296