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Crystal structure of human UTP15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 2.0M (NH4)2SO4, 0.2M Sodium acetate, 0.1M Hepes pH7.5, 5% MPD
Crystal Properties Matthews coefficient Solvent content 1.94 36.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.327 α = 90.11 b = 59.085 β = 66.82 c = 61.868 γ = 62.87
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2021-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 55.47 93.7 0.108 0.145 0.096 0.982 4.7 2.2 57233
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 90 0.464 0.625 0.415 0.672 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 42.69 54327 2896 93.61 0.2331 0.2314 0.2389 0.2634 0.2679 RANDOM 14.976
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.83 -0.17 -0.37 0.2 -0.31 -0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.895 r_dihedral_angle_4_deg 15.158 r_dihedral_angle_3_deg 13.745 r_dihedral_angle_1_deg 7.908 r_angle_refined_deg 1.49 r_angle_other_deg 1.271 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.895 r_dihedral_angle_4_deg 15.158 r_dihedral_angle_3_deg 13.745 r_dihedral_angle_1_deg 7.908 r_angle_refined_deg 1.49 r_angle_other_deg 1.271 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4653 Nucleic Acid Atoms Solvent Atoms 292 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data processing Aimless data processing PDB_EXTRACT data extraction BALBES phasing