☰ Navigation Tabs
Sterol 14alpha demethylase (CYP51) from Naegleria fowleri in complex with an inhibitor R)-N-(1-(3,4'-difluorobiphenyl-4-yl)-2-(1H-imidazol-1-yl)ethyl)-4-(5-phenyl-1,3,4-oxadiazol-2-yl)benzamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3G1Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.34 mM n-Dodecyl-beta-D-maltoside, 5.54 mM TCEP, 15% PEG 3350 (w/v), 5% isopropanol , 0.1M HEPES
Crystal Properties Matthews coefficient Solvent content 2.34 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.062 α = 89.49 b = 75.223 β = 74.63 c = 105.953 γ = 63.98
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Be lens 2021-07-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.11 67.08 96.8 0.073 0.099 0.073 0.995 8.6 3.3 113996 23.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.2 97 0.414 0.613 0.339 0.778 2.4 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3g1q 2.11 64.63 105350 5725 96.81 0.2127 0.2113 0.2373 0.2287 RANDOM 28.549
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 -0.03 0.08 0.1 0.02 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.051 r_dihedral_angle_4_deg 18.154 r_dihedral_angle_3_deg 15.707 r_dihedral_angle_1_deg 7.163 r_rigid_bond_restr 3.916 r_angle_other_deg 1.52 r_angle_refined_deg 1.449 r_chiral_restr 0.07 r_gen_planes_other 0.02 r_bond_other_d 0.017
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.051 r_dihedral_angle_4_deg 18.154 r_dihedral_angle_3_deg 15.707 r_dihedral_angle_1_deg 7.163 r_rigid_bond_restr 3.916 r_angle_other_deg 1.52 r_angle_refined_deg 1.449 r_chiral_restr 0.07 r_gen_planes_other 0.02 r_bond_other_d 0.017 r_gen_planes_refined 0.014 r_bond_refined_d 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14468 Nucleic Acid Atoms Solvent Atoms 941 Heterogen Atoms 508
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction Aimless data scaling MOLREP phasing