7RPM | pdb_00007rpm

Structures of the Intracellular Domain and Transmembrane Domain of the Human alpha7 Nicotinic Acetylcholine Receptors


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N TROSY-HSQC0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
23D BEST-HNCA0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
33D BEST-HN(CO)CA0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
43D TROSY-CBCACONH0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
53D BEST-HNCO0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
62D 1H-15N TROSY-HSQC0.25 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
73D TROSY-HNCA0.25 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
83D TROSY-HN(CO)CA0.25 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
93D TROSY-HNCACB0.25 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE 700
103D TROSY-CBCACONH0.25 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE 700
113D TROSY-HNCO0.25 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE 700
122D 1H-13C HSQC0.25 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE 700
133D 13C-edited NOESY-HSQC0.25 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE 700
142D 1H-15N TROSY-HSQC0.35 mM [U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 900
153D 15N-edited NOESY-TROSY-HSQC0.35 mM [U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 900
162D 1H-15N TROSY-HSQC0.22 mM [U-15N] V311C-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 900
172D 1H-15N TROSY-HSQC0.22 mM [U-15N] C317-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
182D 1H-15N TROSY-HSQC0.3 mM [U-15N] C335-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 53 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
192D 1H-15N TROSY-HSQC0.3 mM [U-15N] C342-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 900
202D 1H-15N TROSY-HSQC0.3 mM [U-15N] S350C-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 53 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 900
212D 1H-15N TROSY-HSQC0.25 mM [U-15N] S358C-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 900
222D 1H-15N TROSY-HSQC0.25 mM [U-15N] C375-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 20 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
232D 1H-15N TROSY-HSQC0.22 mM [U-15N] C390-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 53 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
242D 1H-15N TROSY-HSQC0.25 mM [U-15N] L415C-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
252D 1H-15N TROSY-HSQC0.25 mM [U-15N] C427-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 900
262D 1H-15N TROSY-HSQC0.25 mM [U-15N] C435-MTSL alpha7nAChR TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
272D 1H-15N TROSY-HSQC0.28 mM V311C-MTSL alpha7 TMD-ICD, 0.07 mM [U-15N] V311C alpha7 TMD-ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
282D 1H-15N TROSY-HSQC0.24 mM C427-MTSL alpha7 TMD-ICD, 0.06 mM [U-15N] C427 alpha7 TMD-ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 900
292D 1H-15N TROSY-HSQC0.28 mM V311C alpha7 TMD-ICD, 0.07 mM [U-15N] V311C-MTSL alpha7 TMD-ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
302D 1H-15N TROSY-HSQC0.24 mM C427 alpha7 TMD-ICD, 0.06 mM [U-15N] C427-MTSL alpha7 TMD-ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 900
312D 1H-15N TROSY-HSQC0.25 mM [U-15N] C427-EDTA-Lu3+ alpha7 TMD-ICD, 5 mM sodium acetate, 53 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm308Bruker AVANCE II 900
322D 1H-15N IPAP0.2 mM [U-15N] C427-EDTA-Tm3+ alpha7 TMD-ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm308Bruker AVANCE II 900
332D 1H-15N TROSY-HSQC0.25 mM [U-15N] C317-EDTA-Lu3+ alpha7 TMD-ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm308Bruker AVANCE II 900
342D 1H-15N IPAP0.25 mM [U-15N] C317-EDTA-Tm3+ alpha7 TMD-ICD, 5 mM sodium acetate, 53 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm308Bruker AVANCE II 900
352D 1H-15N TROSY-HSQC0.24 mM [U-15N] C219-EDTA-Lu3+ alpha7 TMD-ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm308Bruker AVANCE II 900
362D 1H-15N IPAP0.22 mM [U-15N] C219-EDTA-Tm3+ alpha7 TMD-ICD, 5 mM sodium acetate, 53 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm308Bruker AVANCE II 900
372D 1H-15N TROSY-HSQC0.35 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
383D TROSY-HNCA0.35 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
393D TROSY-HN(CO)CA0.35 mM [U-13C; U-15N] alpha7nAChR C317 TMD+ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm318Bruker AVANCE II 800
402D 1H-15N TROSY-HSQC0.28 mM V311C-MTSL alpha7 TMD-ICD, 0.07 mM [U-15N] V311C alpha7 TMD-ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm298Bruker AVANCE II 800
412D 1H-15N TROSY-HSQC0.28 mM V311C alpha7 TMD-ICD, 0.07 mM [U-15N] V311C-MTSL alpha7 TMD-ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm298Bruker AVANCE II 800
422D 1H-15N TROSY-HSQC0.24 mM C427-MTSL alpha7 TMD-ICD, 0.06 mM [U-15N] C427 alpha7 TMD-ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm298Bruker AVANCE II 900
432D 1H-15N TROSY-HSQC0.24 mM C427 alpha7 TMD-ICD, 0.06 mM [U-15N] C427-MTSL alpha7 TMD-ICD, 5 mM sodium acetate, 44 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm298Bruker AVANCE II 900
442D 1H-15N TROSY-HSQC0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm298Bruker AVANCE II 800
453D BEST-HNCA0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm298Bruker AVANCE II 800
463D BEST-HN(CO)CA0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm298Bruker AVANCE II 800
473D TROSY-CBCACONH0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm298Bruker AVANCE II 800
483D BEST-HNCO0.24 mM [U-13C; U-15N] alpha7nAChR TMD+ICD, 5 mM sodium acetate, 66 mM LDAO, 25 mM NaCl, 5 % D2O, 20 uM DSS95% H2O/5% D2O25 mM4.71 atm298Bruker AVANCE II 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE II900
2BrukerAVANCE II800
3BrukerAVANCE700
NMR Refinement
MethodDetailsSoftware
naRosetta
naPHENIX
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number1000
Conformers Submitted Total Number15
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin2.1 and 3.1Bruker Biospin
2processingNMRPipe10.9Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisSparky3.190Goddard
4data analysisNMRFAM-SPARKY1.470Lee, Tonelli and Markley
5structure calculationCS-ROSETTA3.17Shen, Vernon, Baker and Bax
6structure calculationRosetta3.7Leaver-Fay, Tyka, Lewis, Lange, Thompson, Jacak, Kaufman, Renfrew, Smith, Sheffler, Davis, Cooper, Treuille, Mandell, Richter, Ban, Fleishman, Corn, Kim, Lyskov, Berrondo, Mentzer, Popovic, Havranek, Karanicolas, Das, Meiler, Kortemme, Gray, Kuhlman, Baker, and Bradley
8refinementRosetta3.7Leaver-Fay, Tyka, Lewis, Lange, Thompson, Jacak, Kaufman, Renfrew, Smith, Sheffler, Davis, Cooper, Treuille, Mandell, Richter, Ban, Fleishman, Corn, Kim, Lyskov, Berrondo, Mentzer, Popovic, Havranek, Karanicolas, Das, Meiler, Kortemme, Gray, Kuhlman, Baker, and Bradley
9refinementPHENIX1.19Liebschner, Afonine, Baker, Bunkoczi, Chen, Croll, Hintze, Hung, Jain, McCoy, Moriarty, Oeffner, Poon, Prisant, Read, Richardson, Richardson, Sammito, Sobolev, Stockwell, Terwilliger, Urzhumtsev, Videau, Williams and Adams
7data analysisMolProbityRichardson