7RLU

Structure of ALDH1L1 (10-formyltetrahydrofolate dehydrogenase) in complex with NADP


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.607
r_dihedral_angle_3_deg12.579
r_dihedral_angle_4_deg12.02
r_dihedral_angle_1_deg4.845
r_angle_refined_deg0.901
r_angle_other_deg0.601
r_long_range_B_refined0.461
r_long_range_B_other0.461
r_mcangle_it0.191
r_mcangle_other0.191
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.607
r_dihedral_angle_3_deg12.579
r_dihedral_angle_4_deg12.02
r_dihedral_angle_1_deg4.845
r_angle_refined_deg0.901
r_angle_other_deg0.601
r_long_range_B_refined0.461
r_long_range_B_other0.461
r_mcangle_it0.191
r_mcangle_other0.191
r_mcbond_it0.1
r_mcbond_other0.1
r_scangle_other0.093
r_scbond_it0.041
r_scbond_other0.041
r_chiral_restr0.033
r_bond_refined_d0.005
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
ALDH1L1 in complex with NADP
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK IV
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles202398
Reported Resolution (Å)2.9
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryD2
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement ProtocolBACKBONE TRACE
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K2 SUMMIT (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL FITTINGCoot
FINAL EULER ASSIGNMENTRELION3.0
RECONSTRUCTIONRELION3.0
MODEL REFINEMENTREFMAC
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION