7RH3

Co-crystallization of human galectin-3 CRD complex with Methyl 2-O-(2-nitro-4-chloro)-benzoyl-3-O-toluoyl-b-D-talopyranoside


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7293100 mM Tris-HCl, pH 7.0, 100 mM MgCl2, 31-35 % w/v polyethylene glycol 6000
Crystal Properties
Matthews coefficientSolvent content
2.0640.43

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 36.201α = 90
b = 57.814β = 90
c = 62.098γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2013-10-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAUSTRALIAN SYNCHROTRON BEAMLINE MX10.9537Australian SynchrotronMX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.0531.2799.90.04324.17.661577
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.051.070.3463.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2NMO1.0530.70161505307099.9040.1570.15660.17338.985
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.114-0.1330.019
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.201
r_dihedral_angle_4_deg13.209
r_dihedral_angle_3_deg10.109
r_dihedral_angle_1_deg7.65
r_lrange_it4.477
r_lrange_other4.476
r_scangle_it2.476
r_scangle_other2.474
r_angle_refined_deg1.981
r_mcangle_it1.781
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.201
r_dihedral_angle_4_deg13.209
r_dihedral_angle_3_deg10.109
r_dihedral_angle_1_deg7.65
r_lrange_it4.477
r_lrange_other4.476
r_scangle_it2.476
r_scangle_other2.474
r_angle_refined_deg1.981
r_mcangle_it1.781
r_mcangle_other1.781
r_scbond_it1.667
r_scbond_other1.664
r_angle_other_deg1.485
r_mcbond_it1.131
r_mcbond_other1.131
r_symmetry_xyhbond_nbd_refined0.298
r_nbd_refined0.247
r_xyhbond_nbd_refined0.224
r_nbd_other0.188
r_symmetry_nbd_other0.179
r_nbtor_refined0.177
r_symmetry_nbd_refined0.156
r_chiral_restr0.11
r_symmetry_nbtor_other0.085
r_bond_refined_d0.018
r_chiral_restr_other0.014
r_gen_planes_refined0.011
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1109
Nucleic Acid Atoms
Solvent Atoms205
Heterogen Atoms35

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing