7RDQ
Cryo-EM structure of Thermus thermophilus reiterative transcription complex with 11nt oligo-G RNA
ELECTRON MICROSCOPY
| Sample |
|---|
| reiterative transcription initiation complex with 11nt oligo-G RNA |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | FEI VITROBOT MARK IV |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 339426 |
| Reported Resolution (Å) | 3 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | C1 |
| Map-Model Fitting and Refinement | ||||||
|---|---|---|---|---|---|---|
| Id | Refinement Space | Refinement Protocol | Refinement Target | Overall B Value | Fitting Procedure | Details |
| 1 (4G7H) | REAL | RIGID BODY FIT | ||||
| 2 (4G7H) | ||||||
| 3 (4G7H) | ||||||
| 4 (4G7H) | ||||||
| 5 (4G7H) | ||||||
| 6 (4G7H) | ||||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN K2 QUANTUM (4k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 0.994 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI TALOS ARCTICA |
| Minimum Defocus (nm) | -1200 |
| Maximum Defocus (nm) | -2800 |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | |
| Nominal Magnification | |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 200 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| PARTICLE SELECTION | RELION | 3.1.0 |
| IMAGE ACQUISITION | SerialEM | |
| CTF CORRECTION | CTFFIND | 4.1 |
| MODEL FITTING | Coot | |
| MODEL REFINEMENT | PHENIX | |
| INITIAL EULER ASSIGNMENT | RELION | 3.1.0 |
| FINAL EULER ASSIGNMENT | RELION | 3.1.0 |
| CLASSIFICATION | RELION | 3.1.0 |
| RECONSTRUCTION | RELION | 3.1.0 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | 2143284 | |||
