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Tankyrase 2 in complex with an inhibitor (OUL211)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OWS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 100 mM Tris pH=8.5, 200mM Lithium Sulphate, 20% PEG3350
Crystal Properties Matthews coefficient Solvent content 2.68 54.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.94 α = 90 b = 96.99 β = 90 c = 119.44 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2019-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.92023 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.93 0.998 15.2 7.9 36379
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.072 0.871
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5OWS 2.052 48.542 36378 1819 99.94 0.191 0.1887 0.1941 0.2244 0.2308 35.436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.162 -0.446 0.284
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.048 r_dihedral_angle_4_deg 16.258 r_dihedral_angle_3_deg 13.037 r_dihedral_angle_1_deg 6.757 r_lrange_it 6.191 r_lrange_other 6.147 r_scangle_it 4.297 r_scangle_other 4.295 r_mcangle_it 3.395 r_mcangle_other 3.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.048 r_dihedral_angle_4_deg 16.258 r_dihedral_angle_3_deg 13.037 r_dihedral_angle_1_deg 6.757 r_lrange_it 6.191 r_lrange_other 6.147 r_scangle_it 4.297 r_scangle_other 4.295 r_mcangle_it 3.395 r_mcangle_other 3.394 r_scbond_it 2.678 r_scbond_other 2.671 r_mcbond_it 2.265 r_mcbond_other 2.265 r_angle_refined_deg 1.358 r_angle_other_deg 1.241 r_nbd_other 0.196 r_nbd_refined 0.189 r_symmetry_nbd_other 0.171 r_nbtor_refined 0.161 r_symmetry_nbd_refined 0.161 r_xyhbond_nbd_refined 0.142 r_symmetry_xyhbond_nbd_refined 0.114 r_symmetry_nbtor_other 0.071 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3354 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing