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CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT F254I COMPLEXED WITH FE, NADH, AND GLYCEROL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RRM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 295.15 0.2M Magnesium chloride hexahydrate; 0.1M Bis-Tris, pH 5.5; 25% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.28 46.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.559 α = 90 b = 54.329 β = 99.97 c = 101.795 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2021-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9999 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 61.841 99.9 0.056 0.993 7.3 3.2 64213 19.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 100 0.273 0.85 1.9 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1RRM 1.85 61.841 64190 3176 99.852 0.184 0.1824 0.1824 0.2154 0.2157 26.386
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.815 -0.794 3.146 -0.049
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.758 r_dihedral_angle_4_deg 14.28 r_dihedral_angle_3_deg 12.215 r_dihedral_angle_1_deg 6.436 r_lrange_it 4.015 r_lrange_other 3.993 r_scangle_it 2.855 r_scangle_other 2.854 r_mcangle_it 2.03 r_mcangle_other 2.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.758 r_dihedral_angle_4_deg 14.28 r_dihedral_angle_3_deg 12.215 r_dihedral_angle_1_deg 6.436 r_lrange_it 4.015 r_lrange_other 3.993 r_scangle_it 2.855 r_scangle_other 2.854 r_mcangle_it 2.03 r_mcangle_other 2.03 r_scbond_it 1.771 r_scbond_other 1.771 r_mcbond_it 1.33 r_mcbond_other 1.33 r_angle_refined_deg 1.3 r_angle_other_deg 1.254 r_nbd_refined 0.196 r_symmetry_nbd_other 0.166 r_nbd_other 0.157 r_nbtor_refined 0.148 r_symmetry_nbd_refined 0.148 r_xyhbond_nbd_refined 0.135 r_symmetry_nbtor_other 0.075 r_symmetry_xyhbond_nbd_refined 0.075 r_chiral_restr 0.061 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5692 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 210
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling REFMAC phasing