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Monomeric PqsE mutant E187R
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5HIO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.16 M CaAcetate, 0.08 M NaCacodylate pH 6.5, 14.4% PEG 8000, 20% Glycerol
protein conc: 7.5mg/ml
cryoprotectant: 10 % (v/v) (2R,3R) -(-)-2,3-Butanediol
Crystal Properties Matthews coefficient Solvent content 2.59 51.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.535 α = 90 b = 60.174 β = 90 c = 128.262 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 R 300K 2021-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54056
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 29.29 99.45 0.093 0.0384 14.36 8.08 88338 12.74
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.69 95.72 0.449 0.3157 1.11 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5HIO 1.65 29.29 1.34 43231 2115 99.92 0.2055 0.2038 0.2038 0.2386 0.2386 16.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 5.5415 f_angle_d 0.7434 f_chiral_restr 0.0427 f_plane_restr 0.0068 f_bond_d 0.0042
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2317 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 16
Software Software Software Name Purpose PHENIX refinement PHASER phasing PDB_EXTRACT data extraction CrysalisPro data reduction CrysalisPro data scaling