☰ Navigation Tabs
CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NADH, AND GLYCEROL (Absence of Nicotinamide ring)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RRM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 295.15 0.1M Bistris pH 5.5; 25% Polyethylene glycol 8000; 0.2M ammonium formate
9.25 mg/ml dissolved in 20mM Tris-HCl, pH7.5 that was supplemented with 0.5mM Fe and 10mM NADH and incubated for 10 min at room temperature.
Crystal Properties Matthews coefficient Solvent content 2.24 45.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.96 α = 90 b = 95.11 β = 116.48 c = 69.36 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9999 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 48.53 99 0.038 0.997 10.9 3.12 141933 16.97
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 99 0.405 0.807 2.2 2.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1RRM 1.4 48.53 141898 6883 98.934 0.158 0.1564 0.1564 0.1794 0.1793 18.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.914 0.095 0.886 -1.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.454 r_dihedral_angle_4_deg 16.163 r_dihedral_angle_3_deg 11.749 r_dihedral_angle_1_deg 6.33 r_lrange_it 3.687 r_lrange_other 3.542 r_scangle_it 2.62 r_scangle_other 2.619 r_scbond_it 1.697 r_scbond_other 1.696
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.454 r_dihedral_angle_4_deg 16.163 r_dihedral_angle_3_deg 11.749 r_dihedral_angle_1_deg 6.33 r_lrange_it 3.687 r_lrange_other 3.542 r_scangle_it 2.62 r_scangle_other 2.619 r_scbond_it 1.697 r_scbond_other 1.696 r_mcangle_it 1.553 r_mcangle_other 1.552 r_angle_other_deg 1.459 r_angle_refined_deg 1.398 r_mcbond_it 1.029 r_mcbond_other 1.028 r_nbd_refined 0.216 r_symmetry_nbd_refined 0.17 r_symmetry_nbd_other 0.165 r_nbtor_refined 0.162 r_nbd_other 0.152 r_xyhbond_nbd_refined 0.12 r_symmetry_xyhbond_nbd_refined 0.116 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.072 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5700 Nucleic Acid Atoms Solvent Atoms 595 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing