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Structure of a cytosolic sulfotransferase of Anopheles gambiae (AGAP001425) in complex with vanillin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7R0O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 25% w/v PEG 3,350, 0.3 M NaCl and Bis/Tris 0.1 M at pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.18 43.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.933 α = 90 b = 92.135 β = 90 c = 102.462 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193 PIXEL DECTRIS EIGER2 XE 16M 2019-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 59.94 99.7 0.1147 9.11 6.5 44293
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.175 0.3665
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7R0O 2.1 59.94 42100 2199 99.81 0.187 0.1854 0.1969 0.2181 0.194 RANDOM 26.884
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.89 -2.08 3.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.155 r_dihedral_angle_3_deg 14.409 r_dihedral_angle_4_deg 14.387 r_dihedral_angle_1_deg 6.026 r_angle_refined_deg 1.662 r_angle_other_deg 1.383 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.155 r_dihedral_angle_3_deg 14.409 r_dihedral_angle_4_deg 14.387 r_dihedral_angle_1_deg 6.026 r_angle_refined_deg 1.662 r_angle_other_deg 1.383 r_chiral_restr 0.075 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5642 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 36
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing