7R0R | pdb_00007r0r

Solution structure of the designed Armadillo repeat protein N(A4)M4C(AII) refined by pseudocontact shifts


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC20 mM sodium phosphate, 2 mM TMSP, 300 uM [U-15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
22D 1H-15N HSQC20 mM sodium phosphate, 2 mM TMSP, 150 uM [U-100% 15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
32D 1H-15N HSQC20 mM sodium phosphate, 2 mM TMSP, 150 uM [U-100% 15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
52D 1H-15N HSQC20 mM sodium phosphate, 2 mM TMSP, 150 uM 15N-Leu A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
122D 1H-15N HSQC20 mM sodium phosphate, 2 mM TMSP, 150 uM [U-15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
112D 1H-15N HSQC20 mM sodium phosphate, 2 mM TMSP, 150 uM [U-15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
82D 1H-15N HSQC20 mM sodium phosphate, 2 mM TMSP, 150 uM [U-15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
72D 1H-15N HSQC20 mM sodium phosphate, 2 mM TMSP, 150 uM [U-15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
132D 1H-15N HSQC20 mM sodium phosphate, 2 mM TMSP, 150 uM 15N-Leu A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
143D 1H-15N NOESY20 mM sodium phosphate, 2 mM TMSP, 150 uM [U-100% 15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
153D 1H-15N NOESY20 mM sodium phosphate, 2 mM TMSP, 150 uM [U-15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
163D 1H-15N NOESY20 mM sodium phosphate, 2 mM TMSP, 150 uM [U-15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
173D 1H-15N NOESY20 mM sodium phosphate, 2 mM TMSP, 300 uM [U-15N] A4M4C90% H2O/10% D2O20 mM7.0AMBIENT atm293Bruker AV600 Neo 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAV600 Neo600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsPCS were determined for 3 different attachment sites. During the refinement the tensor is updatexd in an iterative fashion as described by Cucuzza et al., JNMR 2020. Scaffold restraints are supplied by the regularization macro from CYANA. Three differnt starting sdtrucutres were refined, and for each, the strucutre with the lowest Q factor is submittedCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number400
Conformers Submitted Total Number3
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementCYANA3.98.13Peter Guntert
2chemical shift assignmentCARAKeller and Wuthrich
3structure calculationCYANA3.98.13Guntert, Mumenthaler and Wuthrich