7QXC

Recognition of Staphylococcus aureus wall teichoic acid analogue SA533 (compound 1) by Fab4461

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	9.5	294	10 mM Tris-HCl; 250 mM sodium chloride; 12.9 % w/v polyethylene glycol 20,000; 150 mM CAPSO pH 9.5; 6 % v/v polyethylene glycol 300

Crystal Properties
Matthews coefficient	Solvent content
2.8	56

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 58.191	α = 90
b = 65.448	β = 112.899
c = 74.338	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2020-12-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.97926	ALBA	XALOC

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.45	53.51	96.6	0.028	0.039	0.027	0.997	16.4	3.1		87656			21.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.45	1.53	80.6		0.43	0.593	0.406	0.608	1.5	2.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	separate constant and variable domains of PDB entry 5I1D	1.452	53.51	87588	4368	96.54	0.176	0.1743	0.1999	23.016

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.415		-0.061	0.101		0.269

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.742
r_dihedral_angle_4_deg	21.132
r_dihedral_angle_3_deg	11.908
r_dihedral_angle_1_deg	7.152
r_lrange_it	6.356
r_lrange_other	6.302
r_scangle_it	4.08
r_scangle_other	4.079
r_mcangle_it	3.201
r_mcangle_other	3.2
r_scbond_it	2.613
r_scbond_other	2.613
r_mcbond_it	1.943
r_mcbond_other	1.94
r_angle_refined_deg	1.498
r_angle_other_deg	1.352
r_symmetry_nbd_refined	0.237
r_symmetry_xyhbond_nbd_refined	0.231
r_xyhbond_nbd_refined	0.221
r_nbd_refined	0.197
r_symmetry_nbd_other	0.178
r_nbtor_refined	0.163
r_nbd_other	0.121
r_xyhbond_nbd_other	0.084
r_symmetry_nbtor_other	0.077
r_chiral_restr	0.069
r_symmetry_xyhbond_nbd_other	0.048
r_chiral_restr_other	0.029
r_bond_refined_d	0.009
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3317
Nucleic Acid Atoms
Solvent Atoms	424
Heterogen Atoms	88

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing