☰ Navigation Tabs
Crystal structure of the Shewanella oneidensis MR1 MtrC mutant C453A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LM8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 289 21% PEG 6000, 0.1 M CaCl2, 0.2 M Sodium acetate, pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.74 55.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.061 α = 90 b = 89.797 β = 90 c = 154.286 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2016-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 154.29 99.5 0.099 0.107 0.042 0.997 14 6.6 58700
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 99.3 0.441 0.484 0.198 0.902 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4LM8 1.9 77.73 55739 2892 99.42 0.1535 0.1513 0.1618 0.1956 0.2043 RANDOM 17.464
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.4 0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.17 r_dihedral_angle_3_deg 13.298 r_dihedral_angle_4_deg 12.683 r_dihedral_angle_1_deg 7.091 r_angle_refined_deg 2.813 r_angle_other_deg 1.48 r_chiral_restr 0.162 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_gen_planes_other 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.17 r_dihedral_angle_3_deg 13.298 r_dihedral_angle_4_deg 12.683 r_dihedral_angle_1_deg 7.091 r_angle_refined_deg 2.813 r_angle_other_deg 1.48 r_chiral_restr 0.162 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_gen_planes_other 0.012 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4694 Nucleic Acid Atoms Solvent Atoms 838 Heterogen Atoms 542
Software Software Software Name Purpose REFMAC refinement