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human Carbonic Anhydrase II in complex with N-(2-aminophenyl)-4-((2-oxo-2-((4-sulfamoylbenzyl)amino)ethyl)amino)benzamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FIK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 1.5 M sodium citrate, 0.1 M Tris pH 8.0
Crystal Properties Matthews coefficient Solvent content 2.08 40.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.317 α = 90 b = 41.243 β = 104.346 c = 72.085 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.0 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.428 41.24 97.2 0.029 0.035 0.019 1 32.9 6.4 43568
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.43 1.45 92.4 0.261 0.321 0.184 0.93 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE 4FIK 1.428 35.538 43548 2236 96.905 0.148 0.147 0.1642 0.1711 14.597
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.115 -0.108 0.017 0.135
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.541 r_dihedral_angle_4_deg 25.318 r_dihedral_angle_3_deg 11.737 r_dihedral_angle_1_deg 7.237 r_lrange_it 5.09 r_lrange_other 4.971 r_scangle_it 4.2 r_scangle_other 4.199 r_scbond_it 2.768 r_scbond_other 2.767
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.541 r_dihedral_angle_4_deg 25.318 r_dihedral_angle_3_deg 11.737 r_dihedral_angle_1_deg 7.237 r_lrange_it 5.09 r_lrange_other 4.971 r_scangle_it 4.2 r_scangle_other 4.199 r_scbond_it 2.768 r_scbond_other 2.767 r_mcangle_it 2.191 r_mcangle_other 2.19 r_angle_refined_deg 1.999 r_angle_other_deg 1.492 r_mcbond_it 1.49 r_mcbond_other 1.49 r_symmetry_nbd_refined 0.289 r_nbd_other 0.249 r_nbd_refined 0.235 r_symmetry_nbd_other 0.2 r_symmetry_xyhbond_nbd_refined 0.185 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.105 r_symmetry_nbtor_other 0.088 r_metal_ion_refined 0.062 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2054 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing