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Discovery of Lu AF11167, a Phosphodiesterase 10A inhibitor clinical candidate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T9R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 0.1 M Hepes, 18 % w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.97 37.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.8 α = 90 b = 82.04 β = 90 c = 156.24 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2007-01-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 29.21 98 0.056 8.2 3.45 74959
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 0.384 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1t9r 1.7 19.84 65943 3453 99.22 0.2134 0.21059 0.26815 0.2644 RANDOM 36.436
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.19 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.943 r_dihedral_angle_4_deg 17.496 r_dihedral_angle_3_deg 15.318 r_long_range_B_refined 7.254 r_long_range_B_other 7.139 r_dihedral_angle_1_deg 5.712 r_scangle_other 4.832 r_mcangle_it 3.711 r_mcangle_other 3.711 r_scbond_it 3.329
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.943 r_dihedral_angle_4_deg 17.496 r_dihedral_angle_3_deg 15.318 r_long_range_B_refined 7.254 r_long_range_B_other 7.139 r_dihedral_angle_1_deg 5.712 r_scangle_other 4.832 r_mcangle_it 3.711 r_mcangle_other 3.711 r_scbond_it 3.329 r_scbond_other 3.329 r_mcbond_it 2.748 r_mcbond_other 2.748 r_angle_refined_deg 1.44 r_angle_other_deg 1.388 r_chiral_restr 0.078 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5020 Nucleic Acid Atoms Solvent Atoms 590 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction CrystalClear data scaling MOLREP phasing