7QNL | pdb_00007qnl

LOV2-DARPIN FUSION - D4_DeltaLOV

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1SVX

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	2 M ammonium sulphate, 2% PEG400, 100 mM HEPES, pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
2.69	54.31

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 89.741	α = 90
b = 89.741	β = 90
c = 69.3	γ = 90

Symmetry
Space Group	P 42 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2013-12-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.0	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.71	63.46	95.8	0.066	0.013	0.999	28	25.2		22744

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.71	1.85			0.584	1.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1SVX	1.71	63.456	21609	1135	72.417	0.2	0.1973	0.2	0.2635	0.27	35.86

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.097			0.097		-0.194

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	30.697
r_dihedral_angle_4_deg	26.471
r_dihedral_angle_3_deg	15.361
r_lrange_it	9.57
r_lrange_other	9.302
r_dihedral_angle_1_deg	5.824
r_scangle_it	5.161
r_scangle_other	4.656
r_scbond_it	3.475
r_scbond_other	2.944
r_mcangle_it	2.736
r_mcangle_other	2.736
r_mcbond_it	1.958
r_mcbond_other	1.955
r_angle_refined_deg	1.752
r_angle_other_deg	1.467
r_symmetry_xyhbond_nbd_refined	0.241
r_symmetry_nbd_refined	0.235
r_xyhbond_nbd_refined	0.23
r_nbd_other	0.228
r_nbd_refined	0.227
r_symmetry_nbd_other	0.176
r_nbtor_refined	0.159
r_chiral_restr	0.092
r_symmetry_nbtor_other	0.08
r_symmetry_xyhbond_nbd_other	0.027
r_bond_refined_d	0.013
r_gen_planes_refined	0.01
r_gen_planes_other	0.005
r_bond_other_d	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1823
Nucleic Acid Atoms
Solvent Atoms	167
Heterogen Atoms	50

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
STARANISO	data scaling
MOLREP	phasing