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CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NADH, AND GLYCEROL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RRM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 295.15 50.64 mM Sodium acetate trihydrate, pH 4.5; 15 % (w/v) PEG 3350; 200 mM sodium formate
Crystal Properties Matthews coefficient Solvent content 2.37 48.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.539 α = 90 b = 54.647 β = 103.405 c = 106.562 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Bruker PHOTON II 2021-04-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 51.883 99.8 0.082 0.988 5.3 1.92 39813 14.11
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 99.8 0.292 0.85 1.9 1.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1RRM 2.2 51.883 39804 1962 99.719 0.211 0.2095 0.2095 0.2324 0.2325 21.805
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.998 0.736 -1.101 2.468
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.978 r_dihedral_angle_4_deg 17.69 r_dihedral_angle_3_deg 13.95 r_dihedral_angle_1_deg 7.104 r_lrange_it 2.99 r_lrange_other 2.978 r_angle_other_deg 2.331 r_scangle_it 1.709 r_scangle_other 1.709 r_angle_refined_deg 1.499
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.978 r_dihedral_angle_4_deg 17.69 r_dihedral_angle_3_deg 13.95 r_dihedral_angle_1_deg 7.104 r_lrange_it 2.99 r_lrange_other 2.978 r_angle_other_deg 2.331 r_scangle_it 1.709 r_scangle_other 1.709 r_angle_refined_deg 1.499 r_mcangle_it 1.344 r_mcangle_other 1.344 r_scbond_it 1.044 r_scbond_other 1.044 r_mcbond_it 0.846 r_mcbond_other 0.845 r_nbd_other 0.289 r_symmetry_nbd_other 0.217 r_nbd_refined 0.203 r_symmetry_nbd_refined 0.179 r_xyhbond_nbd_refined 0.155 r_nbtor_refined 0.154 r_symmetry_xyhbond_nbd_other 0.077 r_ncsr_local_group_1 0.076 r_chiral_restr 0.069 r_symmetry_nbtor_other 0.062 r_symmetry_xyhbond_nbd_refined 0.041 r_bond_other_d 0.036 r_bond_refined_d 0.008 r_gen_planes_other 0.008 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5684 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data reduction Aimless data scaling REFMAC phasing