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CRYSTAL STRUCTURE OF E.coli ALCOHOL DEHYDROGENASE - FucO MUTANT N151G, L259V COMPLEXED WITH FE, NAD, AND DIMETHOXYPHENYL ACETAMIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RRM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 295.15 0.1 M Bis-tris pH 5.5; 20 % (w/v) PEG 6000; 0.2 M NaF
Crystal Properties Matthews coefficient Solvent content 2.17 43.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.291 α = 90 b = 85.455 β = 90 c = 137.226 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.9762 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 56.02 100 0.082 0.995 8.3 13.8 22909 48.805
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 0.739 0.522 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1RRM 2.6 56.02 22846 1104 99.943 0.189 0.1873 0.1873 0.2331 0.2332 53.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.726 0.176 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.025 r_dihedral_angle_4_deg 16.746 r_dihedral_angle_3_deg 14.532 r_dihedral_angle_1_deg 7.336 r_lrange_it 4.176 r_lrange_other 4.176 r_scangle_it 2.663 r_scangle_other 2.663 r_mcangle_it 2.566 r_mcangle_other 2.565
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.025 r_dihedral_angle_4_deg 16.746 r_dihedral_angle_3_deg 14.532 r_dihedral_angle_1_deg 7.336 r_lrange_it 4.176 r_lrange_other 4.176 r_scangle_it 2.663 r_scangle_other 2.663 r_mcangle_it 2.566 r_mcangle_other 2.565 r_angle_other_deg 2.32 r_scbond_it 1.636 r_scbond_other 1.636 r_mcbond_it 1.602 r_mcbond_other 1.601 r_angle_refined_deg 1.274 r_symmetry_nbd_refined 0.281 r_nbd_other 0.258 r_symmetry_nbd_other 0.212 r_nbd_refined 0.178 r_symmetry_xyhbond_nbd_refined 0.178 r_nbtor_refined 0.144 r_xyhbond_nbd_refined 0.126 r_ncsr_local_group_1 0.066 r_symmetry_nbtor_other 0.061 r_chiral_restr 0.05 r_bond_other_d 0.036 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5688 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms 116
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling REFMAC phasing