7QI2 | pdb_00007qi2

Magic-angle spinning NMR structure of the human voltage-dependent anion channel 1 (E73V/C127A/C232S) in DMPC lipid bilayers


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1hCANH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
2hcoCAcoNH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
3hCONH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
4hCOcaNH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
5hcaCBcaNH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 950
10hcaCBcacoNH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 950
9hNcacoNH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
8hNcocaNH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
7hCOCANH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
6hcoCACONH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
13hCOCAnH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
12HNhhNH66 % w/w [U-13C; U-15N; U-2H] u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
11hNCAH66 % w/w [U-13C; U-15N]-alpha PET u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
14hNcoCAH66 % w/w [U-13C; U-15N]-alpha PET u[2H,13C,15N]-hVDAC1(E73V/C127A/C232S), 33 % w/w DMPC, 10 mM MES, 150 mM sodium chloride, 20 mM MgCl2100% H2O0.21 M6.51 atm285Bruker AVANCE III HD 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD800
2BrukerAVANCE III HD950
NMR Refinement
MethodDetailsSoftware
naCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number2400
Conformers Submitted Total Number10
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
2structure calculationCYANA3.98.13Guntert, Mumenthaler and Wuthrich
3chemical shift assignmentCYANA3.98.13Guntert, Mumenthaler and Wuthrich
4peak pickingSparky3.113Goddard
5chemical shift assignmentSparky3.113Goddard
6collectionTopSpin3.5pl7Bruker Biospin
7processingTopSpin3.5pl7Bruker Biospin