7QH9 | pdb_00007qh9

TarM(Se)_G117R-4RboP

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.9	293	10% PEG 20 000, 25% PEG MME 550, 0.1 M MES/imidazole, pH 6.9, 0.02 M sodium formate, 0.02 M ammonium acetate, 0.02 M trisodium citrate, 0.02 M sodium potassium tartrate (racemic), 0.02 M sodium oxamate.

Crystal Properties
Matthews coefficient	Solvent content
2.39	48.58

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 58.87	α = 89.971
b = 70.57	β = 90.013
c = 137.38	γ = 90.02

Symmetry
Space Group	P 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 2M		2020-07-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06DA	1.00000	SLS	X06DA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.689	49.237	95.2	0.999	9.98	20		58472

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.689	2.76			0.5

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	AB INITIO PHASING	FREE R-VALUE	2.689	49.235	58471	2863	95.069	0.243	0.2426	0.24	0.2528	0.25	79.364

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
48.702	-9.668	10.084	19.675	1.775	-68.377

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	42.285
r_dihedral_angle_3_deg	20.582
r_dihedral_angle_4_deg	17.166
r_lrange_it	14.99
r_lrange_other	14.989
r_mcangle_it	10.565
r_mcangle_other	10.565
r_scangle_it	10.012
r_scangle_other	10.011
r_mcbond_it	7.684
r_mcbond_other	7.683
r_scbond_it	7.466
r_scbond_other	7.466
r_dihedral_angle_1_deg	3.368
r_chiral_restr_other	1.733
r_angle_other_deg	1.443
r_angle_refined_deg	1.296
r_symmetry_xyhbond_nbd_refined	0.557
r_symmetry_nbd_refined	0.316
r_nbd_other	0.273
r_symmetry_nbd_other	0.196
r_nbd_refined	0.182
r_nbtor_refined	0.159
r_xyhbond_nbd_refined	0.101
r_symmetry_nbtor_other	0.078
r_chiral_restr	0.062
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.002
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	13997
Nucleic Acid Atoms
Solvent Atoms	240
Heterogen Atoms	135

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing