7QEL

Structure of the mouse 8-oxoguanine DNA Glycosylase mOGG1 in complex with ligand TH011247

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		294	0.09M Halogens 0.1M Buffer System 1 pH 6.5 30.0%v/v GOL_P4K (Morpheus Screen, Molecular Dimensions)

Crystal Properties
Matthews coefficient	Solvent content
2.59	52.59

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 81.35	α = 90
b = 81.397	β = 90
c = 168.405	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2021-07-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I24	0.9688	Diamond	I24

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.5	40.732	100	0.996	10.5	11.3		39517

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.5	2.6			0.637	2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6G40	2.5	40.732	39452	1906	99.954	0.254	0.2518	0.2946	56.748

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.654			1.223		-0.569

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.463
r_dihedral_angle_4_deg	17.836
r_dihedral_angle_3_deg	16.78
r_dihedral_angle_1_deg	5.66
r_lrange_it	3.947
r_lrange_other	3.941
r_mcangle_it	2.189
r_mcangle_other	2.189
r_scangle_it	1.452
r_scangle_other	1.452
r_mcbond_it	1.2
r_mcbond_other	1.2
r_angle_refined_deg	1.181
r_angle_other_deg	1.058
r_scbond_it	0.761
r_scbond_other	0.76
r_symmetry_nbd_other	0.167
r_nbd_refined	0.159
r_nbtor_refined	0.152
r_nbd_other	0.152
r_xyhbond_nbd_refined	0.108
r_symmetry_nbtor_other	0.076
r_symmetry_xyhbond_nbd_refined	0.072
r_symmetry_xyhbond_nbd_other	0.066
r_symmetry_nbd_refined	0.063
r_chiral_restr	0.036
r_bond_refined_d	0.002
r_gen_planes_refined	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	7148
Nucleic Acid Atoms
Solvent Atoms	121
Heterogen Atoms	55

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing