POWDER DIFFRACTION
Starting Model(s)
| Initial Refinement Model(s) | |||
|---|---|---|---|
| Type | Source | Accession Code | Details |
| experimental model | PDB | 9INS | |
Crystallization
| Crystalization Experiments | ||||
|---|---|---|---|---|
| ID | Method | pH | Temperature | Details |
| 1 | BATCH MODE | 8.56 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
| 2 | BATCH MODE | 7.88 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
| 3 | BATCH MODE | 8.02 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
| 4 | BATCH MODE | 8.17 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
| 5 | BATCH MODE | 8.26 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
| 6 | BATCH MODE | 8.17 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
| Crystal Properties | |
|---|---|
| Matthews coefficient | Solvent content |
| 3.51 | 64.98 |
| 3.51 | 64.98 |
| 3.51 | 64.98 |
| 3.51 | 64.98 |
| 3.51 | 64.98 |
| 3.51 | 64.98 |
Crystal Data
| Unit Cell | |
|---|---|
| Length ( Å ) | Angle ( ˚ ) |
| a = 78.86015 | α = 90 |
| b = 78.86015 | β = 90 |
| c = 78.86015 | γ = 90 |
| Symmetry | |
|---|---|
| Space Group | I 21 3 |
Diffraction
| Diffraction Experiment | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
| 1 | 1 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2015-12-08 | M | SINGLE WAVELENGTH | |||||
| 2 | 2 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2016-12-14 | M | SINGLE WAVELENGTH | |||||
| 3 | 3 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2016-12-14 | M | SINGLE WAVELENGTH | |||||
| 4 | 4 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2016-12-14 | M | SINGLE WAVELENGTH | |||||
| 5 | 5 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2016-12-14 | M | SINGLE WAVELENGTH | |||||
| 6 | 6 | x-ray | 293 | PIXEL | Malvern Panalytical PIXcel 1D | 2016-12-11 | M | SINGLE WAVELENGTH | ||||||
| Radiation Source | |||||
|---|---|---|---|---|---|
| ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
| 1 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299740 | ESRF | ID22 |
| 2 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299868 | ESRF | ID22 |
| 3 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299995 | ESRF | ID22 |
| 4 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299995 | ESRF | ID22 |
| 5 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299995 | ESRF | ID22 |
| 6 | SEALED TUBE | MALVERN PANALYTICAL EMPYREAN TUBE | 1.540598, 1.544260 | ||
Data Collection
| Overall | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||||
| 1 | 2.288 | 39.43 | 3816 | 3816 | 2 | ||||||||||||||
Refinement
| Statistics | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Work (Depositor) | R-Free (Depositor) | Mean Isotropic B | |||||||||
| POWDER DIFFRACTION | MOLECULAR REPLACEMENT | NONE | 9INS | 2.29 | 39 | 100 | |||||||||||||
| Temperature Factor Modeling | ||||||
|---|---|---|---|---|---|---|
| Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
| RMS Deviations | |
|---|---|
| Key | Refinement Restraint Deviation |
| multtor | 3.84 |
| angle_d | 1.43 |
| singtor | 1 |
| hydrog_d | 0.293 |
| chiral | 0.036 |
| planar_d | 0.02 |
| bond_d | 0.015 |
| Non-Hydrogen Atoms Used in Refinement | |
|---|---|
| Non-Hydrogen Atoms | Number |
| Protein Atoms | 405 |
| Nucleic Acid Atoms | |
| Solvent Atoms | 62 |
| Heterogen Atoms | |
Software
| Software | |
|---|---|
| Software Name | Purpose |
| GSAS | refinement |
| PRODD | data reduction |
| MOLREP | phasing |
| Coot | model building |














