7QAC
The T2 structure of polycrystalline cubic human insulin
POWDER DIFFRACTION
Crystallization
Crystalization Experiments | ||||
---|---|---|---|---|
ID | Method | pH | Temperature | Details |
1 | BATCH MODE | 8.56 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
2 | BATCH MODE | 7.88 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
3 | BATCH MODE | 8.02 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
4 | BATCH MODE | 8.17 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
5 | BATCH MODE | 8.26 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
6 | BATCH MODE | 8.17 | 293 | 13.494 mg/ml insulin, 0.818 mM zinc acetate, 10.563 mM sodium thiocyanate, 0.4 M sodium potassium phosphate (Na2HPO4/KH2PO4) |
Crystal Properties | |
---|---|
Matthews coefficient | Solvent content |
3.51 | 64.98 |
3.51 | 64.98 |
3.51 | 64.98 |
3.51 | 64.98 |
3.51 | 64.98 |
3.51 | 64.98 |
Crystal Data
Unit Cell | |
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Length ( Å ) | Angle ( ˚ ) |
a = 78.86015 | α = 90 |
b = 78.86015 | β = 90 |
c = 78.86015 | γ = 90 |
Symmetry | |
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Space Group | I 21 3 |
Diffraction
Diffraction Experiment | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Crystal ID | Scattering Type | Data Collection Temperature | Detector | Detector Type | Details | Collection Date | Monochromator | Protocol | |||||
1 | 1 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2015-12-08 | M | SINGLE WAVELENGTH | |||||
2 | 2 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2016-12-14 | M | SINGLE WAVELENGTH | |||||
3 | 3 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2016-12-14 | M | SINGLE WAVELENGTH | |||||
4 | 4 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2016-12-14 | M | SINGLE WAVELENGTH | |||||
5 | 5 | x-ray | 293 | SCINTILLATION | Cyberstar LaBr3 | 9 Si(111) analyzer crystals with 9 detectors | 2016-12-14 | M | SINGLE WAVELENGTH | |||||
6 | 6 | x-ray | 293 | PIXEL | Malvern Panalytical PIXcel 1D | 2016-12-11 | M | SINGLE WAVELENGTH |
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299740 | ESRF | ID22 |
2 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299868 | ESRF | ID22 |
3 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299995 | ESRF | ID22 |
4 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299995 | ESRF | ID22 |
5 | SYNCHROTRON | ESRF BEAMLINE ID22 | 1.299995 | ESRF | ID22 |
6 | SEALED TUBE | MALVERN PANALYTICAL EMPYREAN TUBE | 1.540598, 1.544260 |
Data Collection
Overall | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ID # | Resolution (High) | Resolution (Low) | Percent Possible (Observed) | Net I Over Average Sigma (I) | Redundancy | Number Reflections (All) | Number Reflections (Observed) | Observed Criterion Sigma (F) | Observed Criterion Sigma (I) | B (Isotropic) From Wilson Plot | |||||||||
1 | 2.288 | 39.43 | 3816 | 3816 | 2 |
Refinement
Statistics | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Diffraction ID | Structure Solution Method | Cross Validation method | Starting model | Resolution (High) | Resolution (Low) | Number Reflections (R-Free) | Percent Reflections (Observed) | R-Work | R-Free | Mean Isotropic B | |||||||||
POWDER DIFFRACTION | MOLECULAR REPLACEMENT | NONE | 9INS | 2.29 | 39 | 100 |
Temperature Factor Modeling | ||||||
---|---|---|---|---|---|---|
Anisotropic B[1][1] | Anisotropic B[1][2] | Anisotropic B[1][3] | Anisotropic B[2][2] | Anisotropic B[2][3] | Anisotropic B[3][3] | |
RMS Deviations | |
---|---|
Key | Refinement Restraint Deviation |
multtor | 3.84 |
angle_d | 1.43 |
singtor | 1 |
hydrog_d | 0.293 |
chiral | 0.036 |
planar_d | 0.02 |
bond_d | 0.015 |
Non-Hydrogen Atoms Used in Refinement | |
---|---|
Non-Hydrogen Atoms | Number |
Protein Atoms | 405 |
Nucleic Acid Atoms | |
Solvent Atoms | 62 |
Heterogen Atoms |
Software
Software | |
---|---|
Software Name | Purpose |
GSAS | refinement |
PRODD | data reduction |
MOLREP | phasing |
Coot | model building |