☰ Navigation Tabs
Carboxypeptidase T with (S)-3-phenyllactic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3QNV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 SA 1.4%
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.328 α = 90 b = 157.328 β = 90 c = 104.132 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2021-05-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.7749 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 30 99.98 0.133 0.137 18.17 79136
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.82 0.43 0.332
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3QNV 1.73 29.94 75180 3928 99.96 0.1315 0.1308 0.145 0.1453 0.161 RANDOM 15.146
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.507 r_dihedral_angle_4_deg 18.388 r_dihedral_angle_3_deg 11.745 r_dihedral_angle_1_deg 7.218 r_angle_refined_deg 2.162 r_angle_other_deg 1.682 r_chiral_restr 0.138 r_bond_refined_d 0.019 r_gen_planes_refined 0.014 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.507 r_dihedral_angle_4_deg 18.388 r_dihedral_angle_3_deg 11.745 r_dihedral_angle_1_deg 7.218 r_angle_refined_deg 2.162 r_angle_other_deg 1.682 r_chiral_restr 0.138 r_bond_refined_d 0.019 r_gen_planes_refined 0.014 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2581 Nucleic Acid Atoms Solvent Atoms 366 Heterogen Atoms 60
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction