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HUMAN JAK3 KINASE DOMAIN WITH 1-(4-((2-((1-methyl-1H-pyrazol-4-yl)amino)quinazolin-8-yl)amino)piperidin-1-yl)ethan-1-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other in house
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 8-20% PEG3350 and 0.2-0.3M ammonium sulphate (AS). 2% phenylurea
Crystal Properties Matthews coefficient Solvent content 2.13 42.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.12 α = 90 b = 75.244 β = 90 c = 89.449 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 4M 2015-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.984 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.749 89.45 99.9 0.065 0.999 15.3 6.5 32901
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.87 99.9 0.605 0.848 2.6 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE in house 1.749 57.581 32841 1593 99.924 0.185 0.1827 0.2202 0.2266 32.526
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.246 -0.881 -0.365
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.896 r_dihedral_angle_4_deg 20.323 r_dihedral_angle_3_deg 13.621 r_lrange_it 6.605 r_lrange_other 6.604 r_dihedral_angle_1_deg 5.805 r_scangle_it 4.731 r_scangle_other 4.729 r_mcangle_it 3.205 r_mcangle_other 3.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.896 r_dihedral_angle_4_deg 20.323 r_dihedral_angle_3_deg 13.621 r_lrange_it 6.605 r_lrange_other 6.604 r_dihedral_angle_1_deg 5.805 r_scangle_it 4.731 r_scangle_other 4.729 r_mcangle_it 3.205 r_mcangle_other 3.204 r_scbond_it 3.012 r_scbond_other 3.011 r_mcbond_it 2.151 r_mcbond_other 2.15 r_angle_other_deg 1.231 r_angle_refined_deg 1.161 r_nbd_refined 0.195 r_symmetry_nbd_other 0.176 r_nbd_other 0.173 r_symmetry_xyhbond_nbd_refined 0.166 r_symmetry_nbd_refined 0.163 r_nbtor_refined 0.161 r_xyhbond_nbd_refined 0.161 r_symmetry_nbtor_other 0.076 r_symmetry_xyhbond_nbd_other 0.058 r_chiral_restr 0.057 r_bond_refined_d 0.004 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2259 Nucleic Acid Atoms Solvent Atoms 373 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling