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Crystal structure of OmpG in space group 96
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2IWV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 294 30-60 mM Sodium Citrate, 50-70mM NaCl, 12-14 % (w/v) PEG-3350, 60-65 mM n-octyl-beta-d-glucoside, 6-12 mg/mL protein
Crystal Properties Matthews coefficient Solvent content 4.41 72.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.343 α = 90 b = 71.343 β = 90 c = 200.464 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2019-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.97918 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.717 67.304 99.7 0.0247 16.9 2 14670
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.717 2.788 0.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2iwv 2.717 67.304 14670 1453 99.633 0.278 0.274 0.2727 0.328 0.3293 77.184
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.734 -3.734 7.469
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.74 r_dihedral_angle_4_deg 25.072 r_dihedral_angle_3_deg 19.056 r_lrange_it 14.11 r_lrange_other 14.107 r_scangle_it 11.435 r_scangle_other 11.433 r_mcangle_it 10.614 r_mcangle_other 10.612 r_dihedral_angle_1_deg 9.862
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.74 r_dihedral_angle_4_deg 25.072 r_dihedral_angle_3_deg 19.056 r_lrange_it 14.11 r_lrange_other 14.107 r_scangle_it 11.435 r_scangle_other 11.433 r_mcangle_it 10.614 r_mcangle_other 10.612 r_dihedral_angle_1_deg 9.862 r_scbond_it 8.159 r_scbond_other 8.156 r_mcbond_it 7.503 r_mcbond_other 7.499 r_angle_other_deg 2.503 r_angle_refined_deg 1.858 r_symmetry_nbd_other 0.23 r_symmetry_xyhbond_nbd_refined 0.207 r_symmetry_nbd_refined 0.205 r_nbd_refined 0.197 r_nbtor_refined 0.189 r_nbd_other 0.164 r_xyhbond_nbd_refined 0.158 r_symmetry_xyhbond_nbd_other 0.095 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.075 r_bond_other_d 0.036 r_gen_planes_other 0.011 r_bond_refined_d 0.009 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2056 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement Coot model building xia2 data reduction XDS data scaling MOLREP phasing