7PVU

Crystal structure of p38alpha C162S in complex with CAS2094511-69-8, P 1 21 1

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	6.8	293	27% PEG 3350, 0,1M BIS-TRIS pH 6.8

Crystal Properties
Matthews coefficient	Solvent content
2.3	46.5

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 67.141	α = 90
b = 68.072	β = 94.78
c = 79.98	γ = 90

Symmetry
Space Group	P 1 21 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M	Eliptically bent mirror	2020-10-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALBA BEAMLINE XALOC	0.979260	ALBA	XALOC

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.82	79.702	100	0.057	16	5.8		44958			26.7

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.82	1.92	100		0.453	4.4	5.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	3que	2.154	79.702	38816	2015	99.286	0.207	0.2053	0.2395	56.897

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.182		0.263	-1.308		1.426

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	12.907
r_dihedral_angle_6_deg	12.587
r_lrange_it	5.488
r_dihedral_angle_1_deg	5.474
r_lrange_other	5.464
r_dihedral_angle_2_deg	3.117
r_mcangle_it	2.919
r_mcangle_other	2.918
r_scangle_it	2.593
r_scangle_other	2.593
r_mcbond_it	1.642
r_mcbond_other	1.642
r_scbond_it	1.453
r_scbond_other	1.453
r_angle_refined_deg	0.934
r_angle_other_deg	0.319
r_symmetry_xyhbond_nbd_refined	0.208
r_nbd_refined	0.189
r_symmetry_nbd_other	0.183
r_nbtor_refined	0.172
r_nbd_other	0.172
r_symmetry_nbd_refined	0.166
r_xyhbond_nbd_refined	0.149
r_symmetry_nbtor_other	0.074
r_chiral_restr	0.041
r_gen_planes_refined	0.003
r_bond_refined_d	0.002
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5435
Nucleic Acid Atoms
Solvent Atoms	186
Heterogen Atoms	24

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
PDB_EXTRACT	data extraction
PHASER	phasing