X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7PQ7 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.52910.12 M Ethylene glycols, 0.1M Tris/BICINE pH 8.5, 50 % v/v Precipitant Mix 1
Crystal Properties
Matthews coefficientSolvent content
2.1241.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 34.489α = 90
b = 57.67β = 90
c = 93.778γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2018-06-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.9184BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.32948.8697.80.998.943.7851341
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.331.410.65

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE7PQ71.32946.88943262111798.5560.1770.17590.219214.025
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.9050.4260.479
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.966
r_dihedral_angle_3_deg13.042
r_dihedral_angle_4_deg13.018
r_dihedral_angle_1_deg6.235
r_lrange_it3.921
r_lrange_other3.596
r_scangle_it1.919
r_scangle_other1.918
r_angle_refined_deg1.754
r_angle_other_deg1.574
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.966
r_dihedral_angle_3_deg13.042
r_dihedral_angle_4_deg13.018
r_dihedral_angle_1_deg6.235
r_lrange_it3.921
r_lrange_other3.596
r_scangle_it1.919
r_scangle_other1.918
r_angle_refined_deg1.754
r_angle_other_deg1.574
r_mcangle_it1.229
r_mcangle_other1.229
r_scbond_it1.229
r_scbond_other1.229
r_mcbond_it0.773
r_mcbond_other0.769
r_nbd_other0.302
r_symmetry_nbd_refined0.267
r_nbd_refined0.227
r_nbtor_refined0.183
r_xyhbond_nbd_refined0.18
r_symmetry_nbd_other0.174
r_symmetry_xyhbond_nbd_refined0.139
r_chiral_restr0.098
r_symmetry_nbtor_other0.083
r_bond_refined_d0.011
r_gen_planes_refined0.01
r_gen_planes_other0.003
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1549
Nucleic Acid Atoms
Solvent Atoms298
Heterogen Atoms13

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing