☰ Navigation Tabs
Photorhabdus laumondii T6SS-associated Rhs protein carrying the Tre23 toxin domain
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.7258 f_angle_d 0.8301 f_chiral_restr 0.0522 f_plane_restr 0.0055 f_bond_d 0.0046
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 140577 Reported Resolution (Å) 3.17 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol BACKBONE TRACE Refinement Target Overall B Value 75.76 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 49.75
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 5000 Maximum Defocus (nm) 20000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 45000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM 3.8 CTF CORRECTION RELION 3.1 MODEL FITTING Coot 0.9.2 MODEL REFINEMENT PHENIX 1.17.1 INITIAL EULER ASSIGNMENT RELION 3.1 FINAL EULER ASSIGNMENT RELION 3.1 CLASSIFICATION RELION 3.1 RECONSTRUCTION RELION 3.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2623687