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Evolved unspecific peroxygenase with A77L mutation in complex with hexane
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5OXU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 291 1.5M sodium potassium phosphate pH 5.6, 3% MPD
Soaking: 19.5% hexane, 36 hours, cryoprotected with 25% glycerol
Crystal Properties Matthews coefficient Solvent content 2.36 47.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.106 α = 90 b = 57.961 β = 109.17 c = 60.801 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 PIXEL DECTRIS PILATUS 6M MIRRORS KB 2020-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979260 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 44.93 99.9 0.267 0.294 0.12 6.7 6.2 30212
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.86 99.9 0.707 0.773 0.307 2.8 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5OXU 1.82 44.97 28677 1519 99.88 0.2224 0.2199 0.2279 0.2694 0.2773 RANDOM 20.223
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 1.53 -1.46 1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.253 r_dihedral_angle_4_deg 15.316 r_dihedral_angle_3_deg 12.759 r_dihedral_angle_1_deg 6.638 r_angle_refined_deg 1.38 r_angle_other_deg 1.322 r_chiral_restr 0.067 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_refined_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.253 r_dihedral_angle_4_deg 15.316 r_dihedral_angle_3_deg 12.759 r_dihedral_angle_1_deg 6.638 r_angle_refined_deg 1.38 r_angle_other_deg 1.322 r_chiral_restr 0.067 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_refined_d 0.005 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2517 Nucleic Acid Atoms Solvent Atoms 253 Heterogen Atoms 118
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XDS data scaling MOLREP phasing