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Structure of SARS-CoV-2 nucleoprotein in dynamic complex with its viral partner nsp3a
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 NOESY 500 uM sN3, 550 uM sUbl1, 50 mM sodium phosphate, 250 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 250 mM 6.5 1 atm 298 Bruker AVANCE III HD 850 2 15N edited 3D NOESY-HSQC 500 uM [U-15N] sN3, 550 uM sUbl1, 50 mM sodium phosphate, 250 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 250 mM 6.5 1 atm 298 Bruker AVANCE III HD 950 6 15N edited 3D NOESY-HSQC 500 uM [U-15N] sUbl1, 550 uM sN3, 50 mM sodium phosphate, 250 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 250 mM 6.5 1 atm 298 Bruker AVANCE III HD 950 3 13C edited 3D NOESY-HSQC 500 uM [U-13C; U-15N] sN3, 550 uM sUbl1, 50 mM sodium phosphate, 250 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 250 mM 6.5 1 atm 298 Bruker AVANCE III HD 850 4 13C edited 3D NOESY-HSQC 500 uM [U-13C; U-15N] sUbl1, 550 uM sN3, 50 mM sodium phosphate, 250 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 250 mM 6.5 1 atm 298 Bruker AVANCE III HD 950 5 13C edited NOESY-HSQC 500 uM 100% A220I Cd1 13C sUbl1, 550 uM sN3, 50 mM sodium phosphate, 250 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 250 mM 6.5 1 atm 298 Bruker AVANCE III HD 850 7 13C edited 3D NOESY-HSQC 500 uM [U-13C; U-15N] sN3(S235F), 550 uM sUbl1, 50 mM sodium phosphate, 250 mM sodium chloride, 2 mM DTT 90% H2O/10% D2O 250 mM 6.5 1 atm 298 Bruker AVANCE III HD 950
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 950 2 Bruker AVANCE III HD 850
NMR Refinement Method Details Software simulated annealing CNS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 1000 Conformers Submitted Total Number 10 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation CNS 1.3 Brunger, Adams, Clore, Gros, Nilges and Read 2 data analysis NMRFAM-SPARKY Lee, W., Tonelli, M., and Markley, J.L.