7PA2

PARK7 with inhibitor 8RK64

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	9	293	0.1 M Bicine pH 9.0 10% (w/v) PEG 20 000 2% (w/v) 1,4-dioxane

Crystal Properties
Matthews coefficient	Solvent content
2.88	57.29

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 66.859	α = 90
b = 66.859	β = 90
c = 179.688	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2019-06-27	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I24	0.96871	Diamond	I24

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.21	59.9	100	0.028	0.999	16.1	18.1		73359

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.21	1.23	100		0.969	0.447		9.6

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6M8Z	1.21	57.902	73189	3631	99.934	0.133	0.1324	0.1547	19.332

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.35	-0.175		-0.35		1.135

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	33.292
r_dihedral_angle_4_deg	18.675
r_dihedral_angle_other_3_deg	14.049
r_dihedral_angle_3_deg	12.542
r_scangle_other	8.193
r_scangle_it	8.149
r_scbond_other	7.338
r_scbond_it	7.299
r_rigid_bond_restr	6.794
r_lrange_other	6.415
r_dihedral_angle_1_deg	6.311
r_lrange_it	6.122
r_mcangle_it	4.316
r_mcangle_other	4.291
r_mcbond_it	3.378
r_mcbond_other	3.231
r_angle_refined_deg	1.933
r_angle_other_deg	1.612
r_symmetry_xyhbond_nbd_refined	0.529
r_symmetry_nbd_refined	0.234
r_nbd_refined	0.221
r_symmetry_nbd_other	0.171
r_nbtor_refined	0.168
r_nbd_other	0.163
r_chiral_restr	0.122
r_xyhbond_nbd_refined	0.12
r_symmetry_nbtor_other	0.081
r_bond_refined_d	0.017
r_gen_planes_refined	0.01
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_symmetry_xyhbond_nbd_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1384
Nucleic Acid Atoms
Solvent Atoms	168
Heterogen Atoms	25

Software

Software
Software Name	Purpose
REFMAC	refinement
DIALS	data reduction
Aimless	data scaling
PHASER	phasing