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N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH compound 3ag
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 25% w/v PEG1500, 0.1 SPG pH 5.0
Crystal Properties Matthews coefficient Solvent content 2.1 41.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.611 α = 90 b = 52.134 β = 90 c = 57.186 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.91587 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.17 42.59 96.2 0.078 0.989 10.3 5.7 41918
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.17 1.2 87.1 0.766 0.65 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 1.17 38.557 41870 1958 95.834 0.219 0.2178 0.2413 0.2651 18.204
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.237 -0.308 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.077 r_dihedral_angle_4_deg 18.193 r_dihedral_angle_3_deg 12.514 r_dihedral_angle_1_deg 5.133 r_lrange_it 4.591 r_lrange_other 4.59 r_scangle_it 2.163 r_scangle_other 2.162 r_mcangle_it 1.588 r_mcangle_other 1.587
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.077 r_dihedral_angle_4_deg 18.193 r_dihedral_angle_3_deg 12.514 r_dihedral_angle_1_deg 5.133 r_lrange_it 4.591 r_lrange_other 4.59 r_scangle_it 2.163 r_scangle_other 2.162 r_mcangle_it 1.588 r_mcangle_other 1.587 r_scbond_it 1.293 r_scbond_other 1.292 r_angle_other_deg 1.199 r_angle_refined_deg 1.131 r_mcbond_it 0.939 r_mcbond_other 0.939 r_nbd_refined 0.191 r_nbtor_refined 0.173 r_nbd_other 0.171 r_symmetry_nbd_other 0.165 r_symmetry_xyhbond_nbd_refined 0.139 r_symmetry_nbd_refined 0.134 r_xyhbond_nbd_refined 0.083 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.054 r_gen_planes_refined 0.007 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1047 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling