7P6V | pdb_00007p6v

N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH compound 3ag

X-RAY DIFFRACTION

---

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	25% w/v PEG1500, 0.1 SPG pH 5.0

Crystal Properties
Matthews coefficient	Solvent content
2.1	41.52

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 42.611	α = 90
b = 52.134	β = 90
c = 57.186	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2018-07-09	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.91587	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.17	42.59	96.2	0.078	0.989	10.3	5.7		41918

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.17	1.2	87.1		0.766	0.65		4.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	1.17	38.557	41870	1958	95.834	0.219	0.2178	0.22	0.2413	0.25	18.204

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.237			-0.308		0.071

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.077
r_dihedral_angle_4_deg	18.193
r_dihedral_angle_3_deg	12.514
r_dihedral_angle_1_deg	5.133
r_lrange_it	4.591
r_lrange_other	4.59
r_scangle_it	2.163
r_scangle_other	2.162
r_mcangle_it	1.588
r_mcangle_other	1.587
r_scbond_it	1.293
r_scbond_other	1.292
r_angle_other_deg	1.199
r_angle_refined_deg	1.131
r_mcbond_it	0.939
r_mcbond_other	0.939
r_nbd_refined	0.191
r_nbtor_refined	0.173
r_nbd_other	0.171
r_symmetry_nbd_other	0.165
r_symmetry_xyhbond_nbd_refined	0.139
r_symmetry_nbd_refined	0.134
r_xyhbond_nbd_refined	0.083
r_symmetry_nbtor_other	0.077
r_chiral_restr	0.054
r_gen_planes_refined	0.007
r_bond_refined_d	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1047
Nucleic Acid Atoms
Solvent Atoms	192
Heterogen Atoms	52

Software

Software
Software Name	Purpose
REFMAC	refinement
autoPROC	data reduction
Aimless	data scaling