Solution structures of HIV-1 and SIVmac p6 and their interaction with accessory proteins Vpr and Vpx in the presence of DPC micelles
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 1.0 mM unlabeled HIV-1 p6 | 90% H2O/10% D2O | 50 mM | 4 | 1 atm | 323 | Bruker AVANCE 600 |
| 2 | 2D 1H-1H TOCSY | 1.0 mM unlabeled HIV-1 p6 | 90% H2O/10% D2O | 50 mM | 4 | 1 atm | 323 | Bruker AVANCE 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | CNS | ARIA |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 200 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | processing | TopSpin | Bruker Biospin | |
| 2 | structure calculation | ARIA | Linge, O'Donoghue and Nilges | |
| 3 | chemical shift assignment | CcpNmr Analysis | CCPN | |
| 4 | data analysis | CcpNmr Analysis | CCPN | |
