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Solution structures of HIV-1 and SIVmac p6 and their interaction with accessory proteins Vpr and Vpx in the presence of DPC micelles
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1.0 mM unlabeled HIV-1 p6 90% H2O/10% D2O 50 mM 4 1 atm 323 Bruker AVANCE 600 2 2D 1H-1H TOCSY 1.0 mM unlabeled HIV-1 p6 90% H2O/10% D2O 50 mM 4 1 atm 323 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing CNS ARIA
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin Bruker Biospin 2 structure calculation ARIA Linge, O'Donoghue and Nilges 3 chemical shift assignment CcpNmr Analysis CCPN 4 data analysis CcpNmr Analysis CCPN