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Solution structure of the human SF3A1 ubiquitin-like domain
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D HNCACB 2.0 mM [U-13C; U-15N] SF3A1 90% H2O/10% D2O 60 mM 6.0 atmospheric Pa 303 Bruker AVANCE NEO 600 2 3D CBCA(CO)NH 2.0 mM [U-13C; U-15N] SF3A1 90% H2O/10% D2O 60 mM 6.0 atmospheric Pa 303 Bruker AVANCE NEO 600 3 3D HNCO 2.0 mM [U-13C; U-15N] SF3A1 90% H2O/10% D2O 60 mM 6.0 atmospheric Pa 303 Bruker AVANCE NEO 600 4 3D H(CCO)NH 2.0 mM [U-13C; U-15N] SF3A1 90% H2O/10% D2O 60 mM 6.0 atmospheric Pa 303 Bruker AVANCE NEO 600 5 3D H(CCO)NH 2.0 mM [U-13C; U-15N] SF3A1 90% H2O/10% D2O 60 mM 6.0 atmospheric Pa 303 Bruker AVANCE NEO 600 7 3D 15N-1H HSQC NOESY 2.0 mM [U-13C; U-15N] SF3A1 90% H2O/10% D2O 60 mM 6.0 atmospheric Pa 303 Bruker AVANCE 900 8 3D 13Cali-1H HSQC NOESY 2.0 mM [U-13C; U-15N] SF3A1 90% H2O/10% D2O 60 mM 6.0 atmospheric Pa 303 Bruker AVANCE 900 9 3D 13Caro-1H HSQC NOESY 2.0 mM [U-13C; U-15N] SF3A1 90% H2O/10% D2O 60 mM 6.0 atmospheric Pa 303 Bruker AVANCE 900 10 {1H}-15N heteronuclear NOE 1.1 mM [U-100% 15N] SF3A1 90% H2O/10% D2O 60 mM 6.0 atmospheric Pa 303 Bruker AVIII 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVIII 700 3 Bruker AVANCE NEO 600
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 data analysis CARA Keller and Wuthrich 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 4 peak picking ATNOS Herrmann, Guntert and Wuthrich 5 chemical shift assignment CANDID Herrmann, Guntert and Wuthrich