7P08

Solution structure of the human SF3A1 ubiquitin-like domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D HNCACB2.0 mM [U-13C; U-15N] SF3A190% H2O/10% D2O60 mM6.0atmospheric Pa303Bruker AVANCE NEO 600
23D CBCA(CO)NH2.0 mM [U-13C; U-15N] SF3A190% H2O/10% D2O60 mM6.0atmospheric Pa303Bruker AVANCE NEO 600
33D HNCO2.0 mM [U-13C; U-15N] SF3A190% H2O/10% D2O60 mM6.0atmospheric Pa303Bruker AVANCE NEO 600
43D H(CCO)NH2.0 mM [U-13C; U-15N] SF3A190% H2O/10% D2O60 mM6.0atmospheric Pa303Bruker AVANCE NEO 600
53D H(CCO)NH2.0 mM [U-13C; U-15N] SF3A190% H2O/10% D2O60 mM6.0atmospheric Pa303Bruker AVANCE NEO 600
73D 15N-1H HSQC NOESY2.0 mM [U-13C; U-15N] SF3A190% H2O/10% D2O60 mM6.0atmospheric Pa303Bruker AVANCE 900
83D 13Cali-1H HSQC NOESY2.0 mM [U-13C; U-15N] SF3A190% H2O/10% D2O60 mM6.0atmospheric Pa303Bruker AVANCE 900
93D 13Caro-1H HSQC NOESY2.0 mM [U-13C; U-15N] SF3A190% H2O/10% D2O60 mM6.0atmospheric Pa303Bruker AVANCE 900
10{1H}-15N heteronuclear NOE1.1 mM [U-100% 15N] SF3A190% H2O/10% D2O60 mM6.0atmospheric Pa303Bruker AVIII 700
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE900
2BrukerAVIII700
3BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number20
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1data analysisCARAKeller and Wuthrich
2structure calculationCYANAGuntert, Mumenthaler and Wuthrich
3refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
4peak pickingATNOSHerrmann, Guntert and Wuthrich
5chemical shift assignmentCANDIDHerrmann, Guntert and Wuthrich