☰ Navigation Tabs
Crystal structure of a ternary complex of the flavoprotein monooxygenase GrhO5 with FAD and collinone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other RubL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 20 % PEG 3350, 200mM di-sodium malonate
Crystal Properties Matthews coefficient Solvent content 2.82 56.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.666 α = 90 b = 103.747 β = 104.594 c = 69.005 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-09-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 44.19 97 0.2 0.92 5.8 3.2 26914
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 0.49 0.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT NONE RubL 2.3 44.19 26882 1392 97.156 0.227 0.225 0.229 0.2629 0.2615 9.322
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.043 -0.002 0.015 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.358 r_dihedral_angle_4_deg 17.626 r_dihedral_angle_3_deg 15.785 r_dihedral_angle_1_deg 7.473 r_lrange_it 3.421 r_lrange_other 3.348 r_mcangle_it 1.646 r_mcangle_other 1.646 r_scangle_it 1.597 r_scangle_other 1.597
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.358 r_dihedral_angle_4_deg 17.626 r_dihedral_angle_3_deg 15.785 r_dihedral_angle_1_deg 7.473 r_lrange_it 3.421 r_lrange_other 3.348 r_mcangle_it 1.646 r_mcangle_other 1.646 r_scangle_it 1.597 r_scangle_other 1.597 r_angle_refined_deg 1.543 r_angle_other_deg 1.295 r_mcbond_it 0.913 r_mcbond_other 0.913 r_scbond_it 0.893 r_scbond_other 0.892 r_symmetry_xyhbond_nbd_refined 0.225 r_nbd_other 0.209 r_nbd_refined 0.198 r_symmetry_nbd_other 0.193 r_nbtor_refined 0.16 r_xyhbond_nbd_refined 0.156 r_symmetry_nbd_refined 0.132 r_symmetry_nbtor_other 0.079 r_symmetry_xyhbond_nbd_other 0.078 r_chiral_restr 0.071 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3885 Nucleic Acid Atoms Solvent Atoms 278 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing