☰ Navigation Tabs
N-terminal domain of FlSp spidroin from Nephila clavipes
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 293 The crystals were obtained by siting drop vapor technique by mixing 1 ul of protein (10 mg/ml in 20 mM Na acetate, 10 mM NaCl, pH 5.5) with 1ul of 0.2M MgCl2, 0.1M bis-tris pH 5.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.92 35.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.878 α = 90 b = 58.89 β = 106.65 c = 46.33 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.9788 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 44.39 92.6 0.094 0.103 0.042 10.7 5.4 18569
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 66 0.324 0.324 0.381 0.196 2 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 44.39 17621 926 92.22 0.1876 0.186 0.1947 0.2173 0.2191 RANDOM 26.359
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.8 -0.37 2.25 -1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.272 r_dihedral_angle_4_deg 22.638 r_dihedral_angle_3_deg 16.461 r_dihedral_angle_1_deg 5.561 r_angle_refined_deg 1.638 r_angle_other_deg 1.468 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.272 r_dihedral_angle_4_deg 22.638 r_dihedral_angle_3_deg 16.461 r_dihedral_angle_1_deg 5.561 r_angle_refined_deg 1.638 r_angle_other_deg 1.468 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1836 Nucleic Acid Atoms Solvent Atoms 71 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction iMOSFLM data reduction SHELXCD phasing